123.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: MH716014
    Parameters: 2 7 7 80 10 50 500
    Length:  208097

    Tables:   1   

    This is table  1  of  1  ( 23 repeats found )

    Click on indices to view alignment

Table Explanation

  --------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                           Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                    Size     Number   Size        Matches   Indels                                (0-2)

  4703--4758                        28       2.0      28          100       0         112     50   7    21   21   1.72

  8208--8247                        18       2.2      18          100       0         80      17   5    10   67   1.37

  26588--26630                      20       2.0      20          82        13        50      48   6    2    41   1.43

  34881--34938                      29       2.0      29          100       0         116     27   20   37   13   1.91

  34885--34945                      29       2.4      24          84        15        70      26   18   42   13   1.86

  47338--47383                      24       1.9      24          86        0         65      23   19   30   26   1.98

  73524--73611                      21       4.3      21          78        5         108     10   25   13   51   1.72

  73525--73623                      21       5.0      20          78        9         96      11   24   13   51   1.73

  79591--79643                      13       4.1      13          95        0         88      26   13   37   22   1.91

  79796--79830                      17       2.1      17          100       0         70      34   5    37   22   1.78

  81177--81226                      25       2.0      25          100       0         100     24   16   24   36   1.94

  83665--83707                      18       2.4      18          81        18        54      34   25   20   18   1.96

  108015--108070                    28       2.0      28          100       0         112     28   10   46   14   1.78

  128209--128250                    21       2.0      21          100       0         84      19   23   33   23   1.97

  143919--143959                    20       2.0      20          86        9         57      53   2    21   21   1.57

  183348--183387                    16       2.6      16          88        4         55      5    30   27   37   1.78

  191873--191951                    39       2.0      39          95        0         140     22   27   17   31   1.97

  199441--199515                    38       2.0      38          92        2         125     28   18   22   30   1.97

  199976--200029                    27       2.0      27          100       0         108     25   29   29   14   1.95

  201650--201685                    17       2.1      17          100       0         72      50   0    5    44   1.25

  202005--202040                    18       2.1      18          89        5         56      41   13   30   13   1.84

  203301--203348                    24       2.0      24          100       0         96      54   29   8    8    1.60

  Indices                           Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                    Size     Number   Size        Matches   Indels                                (0-2)

  204081--204128                    21       2.3      21          100       0         96      50   4    31   14   1.62
  --------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!