123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MK175054
Parameters: 2 7 7 80 10 50 500
Length: 366612
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7147--7186 20 2.0 20 100 0 80 45 10 25 20 1.81
17617--17698 27 3.0 27 91 3 121 8 37 2 51 1.46
25504--25550 24 2.0 24 100 0 94 12 21 4 61 1.48
40568--40595 11 2.5 11 100 0 56 71 0 21 7 1.09
52696--52725 15 2.0 15 93 0 51 33 10 40 16 1.82
61095--61137 21 2.0 21 86 8 61 23 4 4 67 1.28
95849--95887 14 3.0 14 89 10 57 28 20 7 43 1.79
98409--98440 16 2.0 16 100 0 64 25 12 6 56 1.59
115299--115392 33 2.8 33 98 0 179 20 20 37 22 1.95
119279--119448 70 2.4 70 100 0 340 18 20 19 41 1.91
140631--140675 23 2.0 23 91 4 74 15 40 8 35 1.79
149566--149620 21 2.6 21 91 0 92 18 23 10 47 1.80
187824--187877 26 2.0 27 96 3 101 18 25 20 35 1.95
193532--193580 19 2.6 19 96 0 89 34 22 14 28 1.93
198564--198591 9 3.1 9 100 0 56 42 21 14 21 1.88
200446--200492 24 2.0 24 100 0 94 61 4 21 12 1.48
215116--215188 34 2.1 35 97 2 139 10 12 31 45 1.76
230245--230281 18 2.1 18 100 0 74 32 10 18 37 1.86
250468--250511 22 2.0 22 100 0 88 27 22 18 31 1.97
250471--250518 22 2.2 22 92 0 78 31 20 18 29 1.97
250828--250873 23 2.1 22 92 8 76 41 21 8 28 1.83
258473--258517 22 2.0 23 91 4 74 35 8 40 15 1.79
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
264122--264161 21 1.9 21 100 0 80 30 15 27 27 1.96
264122--264182 21 2.7 21 87 10 77 27 16 29 26 1.97
276990--277045 28 2.0 28 100 0 112 42 7 28 21 1.79
288889--288954 19 3.5 19 85 8 89 15 34 13 36 1.87
325615--325698 21 4.0 21 96 0 141 41 22 19 16 1.90
331169--331209 17 2.3 18 76 16 50 31 19 21 26 1.97
339009--339148 70 2.0 70 100 0 280 35 21 22 20 1.96
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!