123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MT471097
Parameters: 2 7 7 80 10 50 500
Length: 660150
Tables: 1
This is table 1 of 1 ( 43 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4274--4318 22 2.0 22 95 0 81 37 22 22 17 1.94
4458--4495 20 1.9 20 88 0 58 31 21 31 15 1.94
18843--18914 30 2.5 30 95 4 130 37 22 8 31 1.84
19306--19352 24 2.0 24 95 0 85 46 10 27 14 1.78
61120--61145 13 2.0 13 100 0 52 23 15 15 46 1.83
85311--85351 16 2.6 16 88 0 55 41 19 17 21 1.90
152812--152847 16 2.2 16 100 0 72 25 13 19 41 1.88
185827--185860 17 2.0 17 100 0 68 29 11 17 41 1.85
196577--196620 21 2.1 21 95 0 79 31 29 6 31 1.84
202358--202401 21 2.1 21 95 0 79 15 20 4 59 1.54
202616--202667 27 1.9 27 96 0 95 44 23 7 25 1.79
248352--248403 27 1.9 27 96 0 95 38 11 21 28 1.88
256222--256301 40 2.0 40 100 0 160 22 12 32 32 1.91
266815--266888 37 2.0 37 100 0 148 37 24 29 8 1.84
292384--292501 5 23.6 5 100 0 236 0 19 0 80 0.71
300954--300981 14 2.0 14 100 0 56 28 35 0 35 1.58
354274--354317 22 2.0 22 100 0 88 31 27 13 27 1.94
357345--357369 13 1.9 13 100 0 50 32 32 20 16 1.94
362679--362732 21 2.6 21 78 0 72 38 22 25 12 1.90
402684--402723 20 2.0 20 100 0 80 45 10 30 15 1.78
432513--432600 33 2.7 32 94 3 158 29 13 21 35 1.92
447682--447718 18 2.1 18 89 0 56 43 8 24 24 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
448928--448958 15 2.1 15 100 0 62 32 9 32 25 1.88
452303--452340 20 1.9 20 88 0 58 13 28 10 47 1.76
452630--452672 21 2.0 21 95 0 77 60 9 13 16 1.58
462116--462163 24 2.0 24 100 0 96 33 16 20 29 1.95
468333--468377 23 2.0 23 100 0 90 31 26 15 26 1.96
480100--480124 6 4.2 6 100 0 50 52 0 48 0 1.00
499486--499532 17 2.7 17 86 3 58 46 8 8 36 1.65
499503--499536 17 2.0 17 100 0 68 52 5 11 29 1.61
517496--517537 22 2.0 22 86 13 61 14 35 11 38 1.83
518430--518455 13 2.0 13 100 0 52 23 30 7 38 1.83
536340--536484 5 29.0 5 100 0 290 60 0 20 20 1.37
541054--541082 15 1.9 15 100 0 58 20 17 34 27 1.95
541933--541996 21 2.9 21 86 9 83 25 15 32 26 1.95
561605--561645 20 2.0 20 100 0 82 48 4 19 26 1.69
562905--562943 16 2.4 16 82 0 51 66 5 23 5 1.32
563784--563835 26 2.0 26 100 0 104 42 11 19 26 1.85
575140--575188 24 2.0 24 100 0 98 42 12 20 24 1.86
592441--592476 16 2.2 16 100 0 72 41 19 13 25 1.88
612708--612742 18 1.9 18 100 0 70 22 20 11 45 1.82
645434--645475 21 2.0 21 85 0 57 26 33 11 28 1.92
659671--659696 13 2.0 13 100 0 52 23 15 15 46 1.83
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Tables: 1
The End!