123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MW324678
Parameters: 2 7 7 80 10 50 500
Length: 197486
Tables: 1
This is table 1 of 1 ( 83 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2944--2976 17 1.9 17 88 11 50 51 0 3 45 1.16
3066--3159 40 2.3 42 82 10 122 56 0 1 42 1.06
3103--3151 25 1.9 26 87 4 73 53 0 0 46 1.00
3101--3159 25 2.4 25 77 5 66 55 0 0 44 0.99
3225--3260 13 2.7 13 95 4 63 83 13 0 2 0.76
6236--6281 12 3.8 12 100 0 92 69 0 15 15 1.19
6314--6391 33 2.4 33 93 0 138 48 2 28 20 1.62
7635--7673 5 7.8 5 88 11 62 58 0 2 38 1.12
9723--9768 21 2.2 21 88 0 65 43 6 0 50 1.28
9735--9771 3 12.3 3 88 0 56 40 0 0 59 0.97
10633--10684 22 2.4 21 78 9 59 59 3 3 32 1.33
11627--11666 17 2.3 18 87 8 57 32 0 2 65 1.06
12965--13013 18 2.6 19 74 3 55 51 2 2 44 1.24
14592--14635 13 3.6 13 83 16 51 61 0 0 38 0.96
14718--14757 17 2.2 17 86 8 53 40 0 2 57 1.12
26242--26308 33 2.0 33 83 11 84 35 5 2 55 1.40
28811--28853 20 2.0 22 86 8 63 37 0 6 55 1.27
32319--32356 11 3.7 10 83 16 51 13 0 0 86 0.56
32317--32366 14 3.5 15 83 10 52 18 0 0 82 0.68
32324--32366 13 3.2 13 90 3 59 13 0 0 86 0.58
32319--32366 13 3.8 12 81 13 53 14 0 0 85 0.60
32319--32366 24 2.0 23 88 4 69 14 0 0 85 0.60
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
32320--32374 10 5.7 10 81 12 53 18 0 0 81 0.68
32334--32375 13 3.1 14 86 10 52 21 0 0 78 0.75
32322--32374 24 2.2 24 83 6 63 18 0 0 81 0.70
32352--32440 45 2.0 46 80 10 103 43 1 0 55 1.07
32389--32453 12 5.6 12 74 18 57 52 1 0 46 1.10
32415--32475 13 4.6 14 75 19 51 54 3 0 42 1.17
32956--32986 16 1.9 16 93 0 53 45 0 0 54 0.99
32947--33009 30 2.1 29 85 8 83 42 0 0 57 0.99
33682--33717 5 7.2 5 100 0 72 38 0 0 61 0.96
40673--40728 23 2.4 23 100 0 112 30 10 3 55 1.51
41183--41235 10 5.3 10 93 0 79 37 5 0 56 1.23
41183--41235 5 10.6 5 83 0 70 37 5 0 56 1.23
43308--43356 20 2.5 20 82 0 71 32 4 0 63 1.13
43307--43356 9 5.0 10 74 16 50 32 4 0 64 1.12
43309--43367 30 2.0 29 87 9 84 35 3 0 61 1.13
44373--44423 22 2.3 22 82 0 66 66 0 0 33 0.92
45490--45523 11 3.1 11 95 0 59 11 0 0 88 0.52
45489--45521 14 2.4 14 95 5 59 9 0 0 90 0.44
46798--46825 11 2.5 11 100 0 56 75 0 0 25 0.81
53316--53345 13 2.3 13 100 0 60 90 10 0 0 0.47
58353--58390 15 2.3 17 86 13 53 36 5 0 57 1.21
59819--59885 11 6.1 11 100 0 134 19 26 35 17 1.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
60912--60973 12 5.2 12 100 0 124 17 32 33 16 1.92
64379--64428 18 2.7 18 81 6 55 44 0 2 54 1.11
65000--65039 21 2.0 21 85 5 55 40 0 12 47 1.41
67306--67344 18 2.2 18 95 0 69 51 0 7 41 1.31
74271--74304 13 2.7 13 90 4 52 52 0 0 47 1.00
77095--77137 19 2.3 19 80 4 52 65 0 0 34 0.93
79106--79152 17 2.7 18 78 15 55 59 0 0 40 0.97
84222--84261 18 2.2 18 86 4 53 65 5 0 30 1.14
86761--86864 42 2.5 42 80 1 102 22 11 8 57 1.60
86783--86859 21 3.7 21 81 6 93 22 7 9 61 1.52
86800--86870 21 3.4 21 84 7 99 23 9 5 60 1.50
88556--88588 8 4.1 8 100 0 66 24 27 48 0 1.51
89285--89318 13 2.6 13 95 0 59 14 2 0 82 0.79
89256--89338 24 3.1 25 76 13 78 24 3 0 72 1.01
90223--90319 36 2.7 36 86 0 140 25 12 10 51 1.71
93193--93232 16 2.4 16 87 8 53 35 2 2 60 1.24
93446--93515 7 10.0 7 100 0 140 14 14 14 57 1.66
97378--97407 13 2.3 13 94 0 51 30 6 40 23 1.80
98087--98131 11 4.1 11 94 0 81 17 24 26 31 1.97
108315--108358 11 3.8 11 82 8 52 43 0 0 56 0.99
108313--108365 16 3.3 16 82 10 63 41 1 0 56 1.10
108323--108360 9 4.4 9 87 12 62 44 0 0 55 0.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
108416--108454 9 4.3 9 96 0 69 48 0 0 51 1.00
114278--114348 7 9.1 8 76 13 60 74 0 0 25 0.82
114286--114362 8 10.6 7 72 17 50 74 0 1 24 0.90
114281--114352 23 3.2 22 75 20 69 75 0 0 25 0.81
114290--114365 14 5.3 14 78 20 77 75 0 1 23 0.89
134796--134867 26 2.9 24 76 11 74 62 6 2 27 1.35
136172--136205 16 2.0 18 88 11 54 61 0 5 32 1.20
141406--141454 15 3.4 14 83 11 64 73 2 0 24 0.94
146672--146696 13 1.9 13 100 0 50 28 0 0 72 0.86
147257--147294 18 2.1 18 90 9 60 34 0 2 63 1.09
155768--155801 16 2.1 16 88 5 50 61 0 2 35 1.11
160512--160562 22 2.2 23 89 6 77 66 1 1 29 1.13
165583--165613 13 2.4 13 100 0 62 19 41 6 32 1.77
175495--175526 15 2.1 16 88 11 50 68 0 3 28 1.04
185022--185075 26 2.0 28 83 16 71 44 1 7 46 1.42
185647--185672 12 2.2 12 100 0 52 30 0 7 61 1.24
193519--193554 18 1.9 19 88 5 56 52 2 13 30 1.55
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Tables: 1
The End!