123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MW732172
Parameters: 2 7 7 80 10 50 500
Length: 313346
Tables: 1
This is table 1 of 1 ( 73 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4377--4410 12 2.8 12 81 0 50 23 11 29 35 1.90
5555--5605 21 2.5 20 90 3 75 33 17 47 1 1.59
6497--6548 26 2.0 26 100 0 104 19 19 0 61 1.35
7501--7577 26 3.0 26 70 14 86 20 27 22 29 1.98
7501--7606 47 2.1 50 91 8 173 19 25 23 31 1.98
7520--7603 26 3.4 26 66 21 81 16 23 23 35 1.95
8382--8441 24 2.5 24 94 0 102 26 45 0 28 1.54
9785--9888 27 3.9 27 94 0 172 20 44 8 26 1.80
9798--9873 15 5.5 15 68 23 67 21 43 7 27 1.80
9785--9888 54 1.9 54 96 0 190 20 44 8 26 1.80
26393--26437 15 3.0 15 93 0 81 26 15 20 37 1.92
32045--32132 5 17.6 5 100 0 176 38 0 61 0 0.96
36800--36833 12 2.8 12 81 0 50 23 11 29 35 1.90
53390--53434 15 3.0 15 93 0 81 26 15 20 37 1.92
59042--59129 5 17.6 5 100 0 176 38 0 61 0 0.96
63797--63830 12 2.8 12 81 0 50 23 11 29 35 1.90
67449--67553 42 2.5 42 98 0 201 38 16 14 31 1.88
85381--85425 15 3.0 15 93 0 81 26 15 20 37 1.92
91033--91120 5 17.6 5 100 0 176 38 0 61 0 0.96
95788--95821 12 2.8 12 81 0 50 23 11 29 35 1.90
101527--101631 27 3.9 27 97 0 192 25 30 33 10 1.90
101653--101682 15 2.0 15 100 0 60 26 13 20 40 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
102450--102476 14 1.9 14 100 0 54 37 11 51 0 1.37
121865--121909 21 2.1 21 100 0 90 44 8 26 20 1.80
121886--121968 28 3.0 28 100 0 166 39 13 25 21 1.90
123157--123202 18 2.6 18 100 0 92 30 8 41 19 1.82
125158--125345 35 6.0 34 74 23 205 15 36 37 9 1.81
125202--125314 25 4.1 25 72 20 100 15 36 37 10 1.83
125167--125348 60 3.0 60 98 0 346 15 36 37 9 1.81
125997--126123 52 2.4 52 81 0 146 25 35 21 18 1.95
126023--126187 52 3.1 51 84 7 168 24 35 21 17 1.95
127076--127225 45 3.2 45 84 10 201 27 34 18 20 1.95
127085--127247 51 3.3 51 89 5 239 25 33 20 20 1.97
128154--128182 6 4.8 6 100 0 58 0 51 13 34 1.42
128237--128387 51 3.0 51 95 0 257 21 19 20 37 1.94
128617--128724 54 2.0 54 100 0 216 27 33 24 14 1.94
128851--128933 21 4.0 21 95 0 139 16 37 24 21 1.94
131247--131385 27 5.1 27 98 0 260 35 15 28 21 1.93
131791--131926 71 1.9 71 100 0 272 19 29 19 30 1.97
132924--132975 26 2.0 26 100 0 104 61 0 19 19 1.35
133867--133917 21 2.5 21 90 3 77 1 47 17 33 1.59
139763--139850 5 17.6 5 100 0 176 0 61 0 38 0.96
145458--145502 15 3.0 15 93 0 81 37 20 15 26 1.92
166193--166237 15 3.0 15 93 0 81 26 15 20 37 1.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
171845--171932 5 17.6 5 100 0 176 38 0 61 0 0.96
176600--176633 12 2.8 12 81 0 50 23 11 29 35 1.90
181194--181233 16 2.6 16 88 7 57 37 15 45 2 1.59
186988--187022 5 7.0 5 100 0 70 0 60 0 40 0.97
188920--188956 18 2.1 18 90 10 58 13 35 10 40 1.80
193431--193491 21 2.9 22 80 4 72 57 4 32 4 1.41
203519--203606 5 17.6 5 100 0 176 0 61 0 38 0.96
208587--208628 9 4.7 9 87 0 57 28 30 16 23 1.96
208587--208638 18 2.9 18 82 2 61 25 30 17 26 1.97
233681--233725 15 3.0 15 93 0 81 26 15 20 37 1.92
239333--239420 5 17.6 5 100 0 176 38 0 61 0 0.96
244088--244121 12 2.8 12 81 0 50 23 11 29 35 1.90
245266--245316 21 2.5 20 90 3 75 33 17 47 1 1.59
246208--246259 26 2.0 26 100 0 104 19 19 0 61 1.35
247212--247288 26 3.0 26 70 14 86 20 27 22 29 1.98
247212--247317 47 2.1 50 91 8 173 19 25 23 31 1.98
247231--247314 26 3.4 26 66 21 81 16 23 23 35 1.95
248093--248152 24 2.5 24 94 0 102 26 45 0 28 1.54
250357--250498 51 2.8 51 95 0 257 21 17 33 27 1.96
251420--251610 35 6.0 35 73 22 206 9 38 36 15 1.80
251445--251506 25 2.5 25 89 0 97 9 38 37 14 1.79
251420--251601 60 3.0 60 98 0 346 9 37 36 15 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
251518--251566 25 2.0 25 95 0 89 12 36 36 14 1.83
254466--254582 29 4.0 29 100 0 234 20 31 10 37 1.86
254990--255016 13 2.1 13 100 0 54 29 14 22 33 1.94
266833--266858 13 2.0 13 100 0 52 7 30 15 46 1.74
275127--275200 26 2.8 26 91 0 130 41 14 16 27 1.87
285832--285863 16 2.0 16 100 0 64 6 25 12 56 1.59
286175--286231 19 3.0 19 94 0 96 35 17 22 24 1.95
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Tables: 1
The End!