123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_008332
Parameters: 2 7 7 80 10 50 500
Length: 680603
Tables: 1
This is table 1 of 1 ( 70 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
10883--10937 21 2.6 21 88 0 74 16 43 3 36 1.65
29651--29702 23 2.3 22 83 12 61 42 7 25 25 1.81
34131--34155 5 5.0 5 100 0 50 40 0 20 40 1.52
67199--67242 22 2.0 22 100 0 88 31 27 4 36 1.77
68327--68360 15 2.3 15 89 0 50 44 11 11 32 1.77
68905--68978 17 3.9 17 73 21 67 37 25 16 20 1.93
68907--68988 41 2.0 41 95 4 148 34 26 14 24 1.94
77313--77347 5 7.0 5 100 0 70 40 0 0 60 0.97
78859--78896 18 2.1 18 90 0 58 26 21 31 21 1.98
88965--88992 11 2.5 11 100 0 56 71 0 21 7 1.09
110580--110617 18 2.1 18 90 0 58 52 7 23 15 1.69
130101--130135 18 1.9 18 94 0 61 14 25 20 40 1.90
131158--131190 6 5.5 6 100 0 66 33 15 0 51 1.43
144173--144214 21 2.0 21 100 0 84 23 23 14 38 1.92
149468--149502 5 7.2 5 90 6 54 42 2 17 37 1.64
165067--165105 6 6.3 6 96 3 69 48 0 15 35 1.45
165274--165313 20 2.0 20 100 0 80 20 20 15 45 1.86
170620--170650 5 6.2 5 100 0 62 38 19 0 41 1.51
174136--174193 29 2.0 29 96 0 107 22 17 29 31 1.96
188513--188551 20 2.0 20 94 0 69 43 5 20 30 1.73
222169--222198 6 5.0 6 100 0 60 16 16 0 66 1.25
223670--223695 5 5.2 5 100 0 52 23 19 0 57 1.40
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
230187--230217 5 6.2 5 100 0 62 38 19 0 41 1.51
248358--248405 23 2.1 23 92 0 78 20 20 22 35 1.96
256612--256661 24 2.1 24 84 0 64 22 28 28 22 1.99
272137--272198 21 3.0 21 78 0 61 12 29 24 33 1.92
285179--285224 23 2.0 23 95 0 83 43 4 15 36 1.66
286257--286308 27 1.9 27 96 0 95 38 11 21 28 1.88
289914--289969 25 2.2 25 84 12 71 19 14 30 35 1.91
300553--300605 18 2.9 18 80 5 63 22 22 13 41 1.88
300516--300602 36 2.4 36 75 11 88 21 22 16 39 1.92
306274--306339 33 2.0 33 93 0 114 34 12 39 13 1.82
319297--319372 36 2.1 36 97 0 143 19 40 7 31 1.80
319928--320000 34 2.1 35 97 2 139 10 12 31 45 1.76
322381--322446 7 9.1 7 95 5 114 40 0 16 42 1.48
391021--391055 18 1.9 18 100 0 70 28 25 0 45 1.54
396014--396039 5 5.2 5 100 0 52 57 0 23 19 1.40
405115--405159 5 9.0 5 97 0 63 33 0 20 46 1.51
407339--407392 5 11.0 5 98 2 101 38 0 40 20 1.53
411505--411531 5 5.4 5 100 0 54 40 0 18 40 1.51
420628--420664 6 6.3 6 93 6 67 48 32 0 18 1.49
436315--436355 21 2.0 21 90 0 64 34 26 14 24 1.94
436743--436841 37 2.7 37 93 3 164 24 14 14 47 1.80
447206--447258 18 2.9 18 80 5 63 22 22 13 41 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
447169--447255 36 2.4 36 75 11 88 21 22 16 39 1.92
452927--452992 33 2.0 33 93 0 114 34 12 39 13 1.82
465950--466025 36 2.1 36 97 0 143 19 40 7 31 1.80
466581--466653 34 2.1 35 97 2 139 10 12 31 45 1.76
469034--469099 7 9.1 7 95 5 114 40 0 16 42 1.48
494360--494424 34 1.9 34 96 0 121 15 35 16 32 1.91
505984--506015 6 5.3 6 100 0 64 50 0 15 34 1.45
506050--506078 12 2.4 12 100 0 58 51 6 17 24 1.69
507058--507123 7 9.1 7 95 5 114 42 16 0 40 1.48
515189--515232 5 8.8 5 100 0 88 40 0 59 0 0.98
526649--526747 37 2.7 37 93 3 164 47 14 14 24 1.80
534686--534747 29 2.1 29 85 5 81 37 3 37 22 1.71
542826--542862 6 6.3 6 93 6 67 18 0 32 48 1.49
551959--551985 5 5.4 5 100 0 54 40 18 0 40 1.51
556098--556151 5 11.0 5 98 2 101 20 40 0 38 1.53
558331--558375 5 9.0 5 97 0 63 46 20 0 33 1.51
567451--567476 5 5.2 5 100 0 52 19 23 0 57 1.40
572435--572469 18 1.9 18 100 0 70 45 0 25 28 1.54
584985--585023 20 2.0 20 94 0 69 43 5 20 30 1.73
600901--600943 22 2.0 22 90 0 68 25 16 30 27 1.97
609029--609076 23 2.1 23 92 0 78 35 22 20 20 1.96
624101--624152 23 2.3 22 83 12 61 42 7 25 25 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
636194--636220 5 5.4 5 100 0 54 40 0 37 22 1.54
645741--645777 18 2.1 18 94 0 65 45 21 13 18 1.84
654984--655025 6 7.2 6 94 5 77 16 0 50 33 1.46
660302--660331 15 2.0 15 100 0 60 40 0 20 40 1.52
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Tables: 1
The End!