123.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_012116
    Parameters: 2 7 7 80 10 50 500
    Length:  476890

    Tables:   1   

    This is table  1  of  1  ( 14 repeats found )

    Click on indices to view alignment

Table Explanation

  --------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                           Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                    Size     Number   Size        Matches   Indels                                (0-2)

  3533--3579                        16       2.8      17          80        9         60      51   19   17   12   1.77

  105626--105660                    15       2.3      15          85        0         52      42   17   34   5    1.73

  125128--125224                    22       4.4      22          100       0         194     8    45   13   32   1.73

  158582--158618                    19       1.9      19          89        10        58      75   5    10   8    1.17

  237320--237359                    12       3.3      12          83        10        55      82   0    17   0    0.67

  253292--253333                    20       2.2      19          87        12        59      30   19   0    50   1.48

  319976--320007                    2        17.0     2           87        12        50      53   0    0    46   1.00

  319976--320007                    13       2.5      13          100       0         64      53   0    0    46   1.00

  361412--361442                    15       2.1      15          100       0         62      61   0    38   0    0.96

  373235--373303                    21       3.1      21          81        6         75      13   21   8    56   1.63

  375675--375734                    18       3.3      18          92        0         102     31   10   25   33   1.89

  378302--378327                    13       2.0      13          100       0         52      7    15   23   53   1.67

  383042--383122                    39       2.1      38          97        2         153     33   17   25   23   1.96

  436482--436570                    36       2.5      36          92        0         142     25   28   12   33   1.92
  --------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!