123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_015121
Parameters: 2 7 7 80 10 50 500
Length: 401262
Tables: 1
This is table 1 of 1 ( 11 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
122039--122064 12 2.2 12 100 0 52 42 15 7 34 1.75
150728--150770 18 2.4 18 81 18 54 34 25 20 18 1.96
199695--199732 18 2.1 18 95 0 67 21 18 5 55 1.62
202522--202568 18 2.6 18 93 0 76 8 19 6 65 1.41
211709--211738 15 2.0 15 93 0 51 30 0 33 36 1.58
303341--303378 20 1.9 19 85 15 51 15 10 10 63 1.52
331712--331772 21 3.2 21 63 31 55 11 21 49 18 1.78
331712--331780 36 1.9 36 100 0 138 13 21 49 15 1.79
343092--343162 31 2.3 31 95 0 133 30 5 28 35 1.80
377987--378017 14 2.2 14 94 0 53 32 19 25 22 1.97
378315--378341 12 2.2 12 100 0 54 18 22 18 40 1.91
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!