123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_015141
Parameters: 2 7 7 80 10 50 500
Length: 502773
Tables: 1
This is table 1 of 1 ( 21 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
224--276 21 2.5 21 87 0 88 26 24 16 32 1.97
38794--38829 18 2.0 18 94 0 63 52 5 36 5 1.48
162254--162295 21 2.0 21 85 0 57 19 35 11 33 1.88
169917--169973 20 2.9 19 71 7 51 15 10 35 38 1.82
178784--178819 18 2.0 18 88 0 54 11 27 27 33 1.91
181834--181886 25 2.1 25 96 0 97 32 20 18 28 1.97
181831--181891 25 2.8 21 73 20 61 29 24 16 29 1.96
181859--181929 38 1.9 35 83 8 88 29 26 14 29 1.95
247629--247669 14 2.9 14 80 20 50 48 0 0 51 1.00
247640--247675 18 1.9 19 88 5 56 50 0 0 50 1.00
259746--259770 12 2.1 12 100 0 50 60 0 0 40 0.97
284764--284817 24 2.2 24 87 6 74 20 38 16 24 1.92
295134--295182 24 2.0 24 84 0 62 28 40 14 16 1.87
321111--321202 47 1.9 48 88 2 141 17 26 21 34 1.95
339147--339184 17 2.1 19 85 9 53 26 2 5 65 1.27
363430--363468 18 2.2 18 90 0 60 33 20 25 20 1.97
393903--393979 38 2.0 38 94 0 136 36 11 37 14 1.82
396350--396383 15 2.3 15 89 0 50 23 0 50 26 1.50
468805--468894 29 3.1 29 100 0 180 27 13 35 23 1.92
487584--487635 17 2.8 18 80 14 61 13 9 15 61 1.56
497634--497665 14 2.1 16 88 11 50 9 31 9 50 1.66
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!