123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_016740
Parameters: 2 7 7 80 10 50 500
Length: 715001
Tables: 1
This is table 1 of 1 ( 49 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
670--715 20 2.3 20 96 3 85 39 15 13 32 1.85
37686--37723 19 2.0 19 100 0 76 26 26 10 36 1.89
55702--55734 16 2.1 16 94 0 57 63 0 3 33 1.10
55702--55761 18 3.2 18 84 9 75 61 0 1 36 1.06
55706--55761 16 3.4 16 85 5 58 62 0 1 35 1.06
55737--55797 16 4.1 15 78 14 56 47 0 0 52 1.00
55763--55800 13 3.0 13 80 3 51 47 0 0 52 1.00
109453--109477 12 2.1 12 100 0 50 16 36 8 40 1.77
119556--119629 30 2.5 30 97 0 139 13 31 17 37 1.89
120743--120775 16 2.1 16 100 0 66 42 18 24 15 1.88
123494--123536 15 2.9 15 100 0 86 6 39 6 46 1.58
197516--197579 10 6.3 10 92 3 101 51 0 7 40 1.31
197457--197528 19 3.9 19 70 17 53 52 1 2 43 1.24
229827--229901 26 2.8 26 87 6 105 37 24 13 25 1.91
268539--268569 16 1.9 16 100 0 62 32 3 0 64 1.09
281234--281272 19 2.0 20 85 14 55 48 10 30 10 1.70
327562--327603 21 2.0 21 95 0 75 28 28 11 30 1.92
327909--327952 22 2.0 22 100 0 88 22 22 22 31 1.98
339044--339076 16 1.9 18 88 11 52 51 9 24 15 1.72
349131--349163 14 2.4 14 94 0 57 42 3 12 42 1.57
360465--360499 5 7.0 5 86 0 52 40 0 34 25 1.56
360465--360499 15 2.3 15 100 0 70 40 0 34 25 1.56
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
403545--403580 3 12.0 3 87 0 54 33 0 0 66 0.92
403573--403619 18 2.7 18 78 15 53 57 2 0 40 1.11
440993--441041 12 4.1 12 97 0 89 44 16 0 38 1.48
453367--453396 12 2.5 12 88 0 51 30 0 0 70 0.88
453366--453406 10 3.8 11 78 15 50 34 0 0 65 0.93
453565--453607 21 2.0 21 95 0 77 37 16 9 37 1.81
454510--454536 12 2.2 12 100 0 54 33 7 22 37 1.82
455852--455946 7 14.1 7 68 19 60 65 0 0 34 0.93
455852--455946 27 3.5 27 100 0 190 65 0 0 34 0.93
457980--458005 13 2.0 13 100 0 52 38 7 0 53 1.30
463328--463376 24 2.0 24 96 0 89 28 30 12 28 1.93
467348--467422 9 9.0 9 66 16 54 33 25 8 33 1.85
467344--467434 15 5.6 17 74 16 86 36 24 6 32 1.81
467351--467427 24 3.2 24 100 0 154 33 24 7 33 1.84
479897--479922 12 2.2 12 100 0 52 42 0 0 57 0.98
533483--533527 15 2.9 16 78 18 51 11 33 8 46 1.70
542819--542865 23 2.0 23 100 0 94 38 29 0 31 1.58
548779--548810 16 2.0 16 100 0 64 31 25 6 37 1.81
616303--616337 16 2.2 16 94 0 61 22 37 20 20 1.95
633803--633840 17 2.2 17 100 0 76 60 0 10 28 1.30
643083--643164 19 4.3 20 73 17 68 46 1 1 51 1.16
643096--643163 27 2.5 28 90 4 104 47 0 0 52 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
643116--643163 8 5.5 8 77 18 51 43 0 0 56 0.99
655234--655263 15 2.0 15 93 0 51 33 10 33 23 1.88
692251--692290 21 1.9 21 89 0 62 45 15 27 12 1.82
692936--692997 31 2.0 31 93 0 106 16 24 14 45 1.84
713330--713354 12 2.1 12 100 0 50 32 8 0 60 1.26
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!