123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_017855
Parameters: 2 7 7 80 10 50 500
Length: 281132
Tables: 1
This is table 1 of 1 ( 21 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3267--3304 18 2.1 18 85 9 51 73 2 10 13 1.19
24523--24617 42 2.3 42 96 3 174 31 21 10 36 1.87
43174--43335 71 2.3 71 100 0 324 31 18 15 34 1.92
65187--65259 36 1.9 37 91 8 121 30 15 26 28 1.96
75323--75362 12 3.3 12 85 0 53 35 0 55 10 1.34
79117--79182 22 3.0 22 100 0 132 13 27 4 54 1.58
96859--97020 71 2.3 71 100 0 324 31 18 15 34 1.92
104442--104517 27 2.8 27 97 0 143 17 22 32 27 1.96
113373--113408 18 2.0 18 100 0 72 33 27 5 33 1.80
114549--114604 21 2.5 23 88 8 80 21 32 26 19 1.97
114644--114705 21 2.8 22 85 9 90 19 37 24 19 1.94
162198--162289 36 2.6 36 92 3 132 30 22 14 32 1.93
165768--165795 6 4.7 6 100 0 56 17 32 0 50 1.47
208917--208952 18 2.0 18 100 0 72 33 27 5 33 1.80
210093--210148 21 2.5 23 88 8 80 21 32 26 19 1.97
210188--210249 21 2.8 22 85 9 90 19 37 24 19 1.94
221630--221655 13 2.0 13 100 0 52 23 7 53 15 1.67
256299--256334 18 2.0 18 100 0 72 33 27 5 33 1.80
257475--257530 21 2.5 23 88 8 80 21 32 26 19 1.97
257570--257631 21 2.8 22 85 9 90 19 37 24 19 1.94
269012--269037 13 2.0 13 100 0 52 23 7 53 15 1.67
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!