123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_018551
Parameters: 2 7 7 80 10 50 500
Length: 258426
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
18832--18906 28 2.7 28 97 0 141 14 16 24 45 1.84
21454--21568 36 3.2 36 97 0 212 29 30 22 17 1.97
26323--26379 29 2.0 29 100 0 114 31 17 29 21 1.96
42734--42765 15 2.1 15 94 0 55 68 3 28 0 1.04
58641--58679 19 2.1 19 100 0 78 33 10 20 35 1.86
58818--58937 39 3.1 39 100 0 240 42 12 15 30 1.83
60786--60819 17 2.0 17 94 0 59 38 11 26 23 1.89
62522--62552 13 2.4 13 94 0 53 9 25 29 35 1.88
66711--66762 26 2.0 26 100 0 104 19 15 23 42 1.89
69608--69694 36 2.4 36 94 1 149 28 16 26 28 1.97
69809--69846 20 1.9 20 100 0 76 26 7 21 44 1.79
87029--87055 12 2.2 12 100 0 54 22 37 29 11 1.89
123717--123773 21 2.7 21 100 0 114 15 10 19 54 1.70
142528--142595 34 2.0 34 88 0 100 26 29 26 17 1.98
158003--158062 25 2.4 25 100 0 120 25 28 30 16 1.97
165770--165875 18 5.6 18 77 12 113 53 0 43 2 1.15
165770--165883 39 2.9 39 98 1 221 54 0 42 2 1.14
189578--189697 39 3.1 39 100 0 240 42 12 15 30 1.83
191546--191579 17 2.0 17 94 0 59 38 11 26 23 1.89
193282--193312 13 2.4 13 94 0 53 9 25 29 35 1.88
197471--197522 26 2.0 26 100 0 104 19 15 23 42 1.89
200473--200521 22 2.2 22 96 0 89 36 20 20 22 1.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
207680--207704 12 2.1 12 100 0 50 28 24 16 32 1.96
208684--208740 29 2.0 29 100 0 114 21 31 19 28 1.97
221448--221486 17 2.3 17 95 0 69 35 23 0 41 1.55
227713--227754 18 2.4 18 84 11 52 28 33 14 23 1.94
230283--230312 15 2.0 15 100 0 60 40 20 20 20 1.92
245019--245094 37 2.1 37 100 0 152 10 38 10 40 1.74
256661--256726 29 2.2 30 89 8 107 31 21 28 18 1.96
256673--256729 29 2.0 29 100 0 114 28 19 31 21 1.97
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!