123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_024624
Parameters: 2 7 7 80 10 50 500
Length: 511530
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
131575--131602 7 4.0 7 100 0 56 42 14 14 28 1.84
138751--138786 18 2.0 18 100 0 72 33 27 22 16 1.95
146717--146773 28 2.0 28 100 0 114 35 14 31 19 1.91
153371--153408 20 1.9 20 84 10 51 39 0 2 57 1.12
155098--155154 28 2.1 26 84 12 71 50 19 12 17 1.77
158740--158775 18 2.0 18 100 0 72 27 0 5 66 1.13
211585--211684 27 3.7 27 83 1 137 23 21 33 23 1.98
211575--211683 54 2.0 55 96 1 202 26 19 32 22 1.97
225094--225159 26 2.5 26 100 0 132 12 24 21 42 1.86
225356--225432 27 2.9 27 92 0 127 27 16 20 35 1.95
241743--241783 16 2.6 16 92 0 64 78 9 4 7 1.10
262082--262181 27 3.7 27 83 1 137 23 21 33 23 1.98
262072--262180 54 2.0 55 96 1 202 26 19 32 22 1.97
284015--284121 33 3.3 33 67 12 103 31 13 40 14 1.85
284012--284156 65 2.2 65 98 1 281 31 14 40 13 1.84
284036--284138 31 3.2 31 66 12 91 33 15 38 12 1.85
284050--284153 32 3.2 32 66 12 95 31 15 41 11 1.83
313167--313197 13 2.4 13 100 0 62 35 19 19 25 1.95
336019--336090 21 3.4 21 100 0 144 19 9 23 47 1.79
338205--338242 19 2.0 19 89 0 58 39 18 13 28 1.88
361193--361281 33 2.7 33 98 0 169 37 10 25 26 1.88
384282--384321 21 1.9 21 100 0 80 37 20 10 32 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
385519--385632 57 2.0 57 100 0 228 22 24 38 14 1.91
392224--392280 28 2.0 28 100 0 114 35 14 31 19 1.91
394166--394193 14 2.0 14 100 0 56 28 0 28 42 1.56
416157--416197 20 2.1 19 95 4 73 19 14 17 48 1.81
451998--452042 14 3.1 14 93 6 81 22 13 0 64 1.28
451996--452040 15 3.1 15 93 6 83 24 13 0 62 1.31
452953--453020 33 2.1 33 100 0 136 26 23 8 41 1.83
453722--453746 12 2.1 12 100 0 50 32 0 24 44 1.54
470692--470752 17 3.0 20 73 26 65 47 11 1 39 1.50
470716--470750 9 4.0 9 92 7 63 45 11 0 42 1.40
470717--470750 17 2.0 17 100 0 68 47 11 0 41 1.40
482287--482326 21 1.9 21 94 0 71 25 30 25 20 1.99
497949--497995 24 2.0 24 86 0 67 23 27 21 27 1.99
508468--508509 21 2.0 21 100 0 84 38 19 28 14 1.90
508490--508567 29 2.7 29 97 0 147 29 23 33 14 1.93
510835--510937 21 4.9 21 96 0 179 33 20 30 15 1.94
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Tables: 1
The End!