123.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_026515 Parameters: 2 7 7 80 10 50 500 Length: 501401 Tables: 1 This is table 1 of 1 ( 97 repeats found ) Click on indices to view alignment Table Explanation --------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 5569--5616 24 2.0 24 100 0 96 25 8 25 41 1.83 15805--15914 41 2.8 38 86 5 150 24 26 35 13 1.93 15926--15964 19 2.1 19 100 0 78 10 25 23 41 1.86 19053--19091 19 2.1 19 90 0 60 7 28 25 38 1.83 22119--22155 16 2.3 17 81 13 51 56 29 10 2 1.47 26749--26826 19 4.2 19 85 9 99 43 21 25 8 1.82 26770--26824 17 3.1 17 90 10 92 43 20 25 10 1.84 26751--26824 36 2.1 36 92 5 123 45 20 24 9 1.80 42810--42870 19 3.2 19 93 4 88 42 22 26 8 1.81 47920--47984 19 3.6 19 68 16 66 52 21 20 6 1.68 52104--52150 21 2.2 21 84 0 58 6 25 25 42 1.78 52614--52682 21 3.3 21 90 8 88 10 15 31 42 1.81 59460--59578 45 2.8 41 79 9 141 16 31 25 26 1.97 62672--62696 13 1.9 13 100 0 50 16 8 28 48 1.74 63180--63235 29 1.9 29 96 0 103 37 3 8 50 1.51 67879--67968 23 3.9 23 98 0 162 11 30 20 38 1.87 75414--75438 13 1.9 13 100 0 50 32 0 20 48 1.50 80075--80107 17 1.9 17 100 0 66 30 12 12 45 1.78 88579--88614 17 2.1 17 100 0 72 44 19 25 11 1.83 88628--88757 41 3.2 40 75 16 149 10 31 24 33 1.88 91864--91902 19 2.1 19 100 0 78 41 23 25 10 1.86 94201--94247 24 2.0 24 86 0 67 23 27 21 27 1.99 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 101567--101614 24 2.0 24 100 0 96 41 25 8 25 1.83 106297--106335 19 2.1 19 100 0 78 5 20 23 51 1.67 108475--108509 17 2.1 17 100 0 70 11 22 20 45 1.82 117683--117721 19 2.1 19 100 0 78 10 25 23 41 1.86 126826--126871 19 2.4 19 79 13 67 41 21 26 10 1.86 126924--127012 41 2.2 41 95 4 162 6 31 23 38 1.81 135358--135425 36 1.9 35 85 5 93 32 23 35 8 1.86 146909--146950 19 2.5 16 76 23 50 40 21 28 9 1.84 146917--146962 19 2.4 19 100 0 92 36 21 28 13 1.91 149010--149086 19 4.1 19 96 0 136 41 20 28 9 1.83 149098--149238 41 3.3 41 80 16 180 9 32 24 33 1.88 149098--149256 41 3.8 41 79 14 162 10 32 23 33 1.89 149093--149256 86 1.9 86 89 2 258 11 32 23 32 1.90 151666--151801 37 3.6 37 76 14 141 25 27 33 12 1.92 151653--151799 78 1.9 78 91 0 240 25 25 36 12 1.92 151806--151851 19 2.4 19 79 13 67 10 26 21 41 1.86 158040--158073 17 2.0 17 100 0 68 58 5 23 11 1.55 185517--185577 19 3.2 19 93 4 88 42 22 26 8 1.81 185711--185777 34 2.0 34 90 0 107 29 31 11 26 1.92 192633--192683 16 2.8 19 71 17 54 45 19 29 5 1.74 192688--192809 42 2.9 42 90 1 174 9 36 23 29 1.87 198188--198266 29 2.7 29 90 4 122 37 18 34 8 1.82 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 198344--198507 71 2.3 71 91 4 260 29 18 21 29 1.97 198777--198865 41 2.2 41 95 4 162 6 31 23 38 1.81 205163--205195 16 2.1 16 88 11 50 39 21 6 33 1.78 205480--205520 21 2.0 21 90 0 64 36 9 24 29 1.87 211829--211896 35 1.9 35 100 0 136 22 16 20 41 1.90 213875--213949 20 3.6 20 71 16 71 28 32 16 24 1.96 213895--213972 23 3.5 23 71 16 83 28 33 15 23 1.95 213871--213975 43 2.4 43 100 0 210 26 32 14 26 1.94 215641--215696 27 2.1 27 93 0 94 41 10 19 28 1.85 217289--217432 38 3.8 38 97 0 261 38 11 29 20 1.88 238371--238496 42 2.9 42 87 10 159 28 23 35 12 1.91 238504--238575 19 3.9 19 82 10 96 9 23 18 48 1.77 240561--240598 19 2.0 19 89 0 58 39 18 13 28 1.88 275337--275372 17 2.1 17 100 0 72 44 19 25 11 1.83 309893--309931 19 2.1 19 90 0 60 7 28 25 38 1.83 313123--313158 17 2.1 17 100 0 72 11 25 19 44 1.83 334866--334951 44 2.0 44 100 0 172 19 34 17 27 1.95 335852--335950 29 3.4 29 100 0 198 18 34 13 34 1.89 346971--347093 41 3.0 39 88 8 133 39 20 30 8 1.83 346995--347119 41 3.2 40 92 7 204 37 24 31 7 1.82 347131--347193 19 3.4 19 91 8 112 12 26 20 39 1.89 347133--347187 17 3.1 17 94 5 92 10 25 20 43 1.84 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 348475--348553 36 2.2 36 97 2 151 36 25 30 7 1.84 348569--348621 24 2.2 24 86 6 72 11 30 18 39 1.86 369742--369848 37 2.9 37 84 1 117 10 37 25 27 1.88 379061--379102 20 2.0 21 90 4 68 42 11 9 35 1.74 381282--381409 41 2.8 44 85 12 163 25 23 33 17 1.96 385598--385639 21 2.0 21 85 0 57 38 38 4 19 1.73 408197--408254 20 2.9 20 100 0 116 44 15 0 39 1.47 408198--408251 10 5.4 10 72 0 54 46 14 0 38 1.45 409799--409860 31 2.0 31 100 0 124 25 29 16 29 1.96 413427--413494 35 1.9 35 100 0 136 22 16 20 41 1.90 415473--415547 20 3.6 20 71 16 71 28 32 16 24 1.96 415493--415570 23 3.5 23 71 16 83 28 33 15 23 1.95 415469--415573 43 2.4 43 100 0 210 26 32 14 26 1.94 417239--417294 27 2.1 27 93 0 94 41 10 19 28 1.85 418887--419026 38 3.7 38 97 0 253 39 11 30 18 1.86 426903--426942 19 2.1 19 100 0 80 40 22 27 10 1.86 429101--429139 19 2.1 19 85 9 53 7 25 12 53 1.65 434292--434328 19 1.9 19 88 0 56 54 0 0 45 1.00 448658--448693 17 2.1 17 100 0 72 44 19 25 11 1.83 449145--449194 17 2.9 17 93 0 82 48 22 18 12 1.80 449412--449445 17 2.0 17 100 0 68 41 23 17 17 1.90 471440--471477 19 2.0 19 100 0 76 42 21 26 10 1.85 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 473525--473601 19 4.1 19 96 0 136 41 20 28 9 1.83 473613--473753 41 3.3 41 80 16 180 9 32 24 33 1.88 473613--473771 41 3.8 41 79 14 162 10 32 23 33 1.89 473608--473771 86 1.9 86 89 2 258 11 32 23 32 1.90 476181--476316 37 3.6 37 76 14 141 25 27 33 12 1.92 476168--476314 78 1.9 78 91 0 240 25 25 36 12 1.92 476321--476366 19 2.4 19 79 13 67 10 26 21 41 1.86 482555--482588 17 2.0 17 100 0 68 58 5 23 11 1.55 498825--498933 29 3.8 29 91 1 166 8 44 13 33 1.74 --------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 The End!