123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_027976
Parameters: 2 7 7 80 10 50 500
Length: 346544
Tables: 1
This is table 1 of 1 ( 67 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
625--674 24 2.1 24 96 0 91 20 26 28 26 1.99
3468--3528 29 2.1 29 96 0 113 29 22 31 16 1.96
4473--4522 18 2.8 18 90 0 82 26 26 10 38 1.87
12988--13036 18 2.7 18 90 0 71 24 26 24 24 2.00
23614--23723 55 2.0 55 92 0 184 28 26 22 22 1.99
24292--24327 18 2.0 18 94 0 63 30 25 5 38 1.78
33800--33874 23 3.0 24 79 13 73 38 10 10 40 1.75
35727--35786 26 2.3 26 82 0 75 35 15 10 40 1.80
49350--49443 30 3.2 30 62 17 79 22 36 17 24 1.95
49338--49453 58 2.0 58 100 0 232 22 32 18 25 1.97
49346--49435 28 3.1 28 61 17 67 24 35 16 23 1.95
55222--55271 18 2.8 18 90 0 82 24 24 28 24 2.00
56199--56277 37 2.1 37 92 0 131 24 13 30 31 1.94
56289--56484 30 7.2 30 88 11 252 25 21 29 24 1.99
56351--56411 20 3.0 20 100 0 122 19 29 21 29 1.98
56291--56471 100 1.8 100 100 0 362 24 23 27 25 2.00
61658--61716 31 1.9 31 92 0 100 16 30 25 27 1.97
62622--62715 47 2.0 47 95 0 170 12 36 25 25 1.92
65487--65527 20 2.0 20 90 0 64 48 0 19 31 1.49
65496--65526 6 5.2 6 96 0 53 51 0 19 29 1.47
65493--65571 36 2.2 36 81 2 88 45 5 17 31 1.70
67642--67690 18 2.7 18 90 0 71 24 26 24 24 2.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
70316--70423 56 1.9 56 98 0 207 25 33 9 32 1.87
82277--82319 20 2.2 20 86 0 59 37 41 16 4 1.69
91343--91420 39 2.0 39 97 0 147 30 21 30 16 1.96
104277--104329 27 1.9 28 84 3 72 50 11 18 18 1.76
108317--108364 24 2.0 24 95 0 87 22 29 18 29 1.98
110702--110747 24 1.9 24 100 0 92 19 23 30 26 1.98
112532--112584 26 2.1 26 82 6 65 35 20 9 33 1.85
112706--112763 22 2.9 21 73 21 61 32 13 24 29 1.94
113891--113924 12 2.8 12 100 0 68 41 8 8 41 1.67
113906--113958 18 3.1 18 75 10 56 41 13 7 37 1.72
113859--113978 48 2.4 49 81 10 147 40 11 10 36 1.77
117593--117627 12 2.9 12 100 0 70 8 22 42 25 1.82
125512--125556 16 2.9 15 81 12 56 28 15 4 51 1.63
127223--127283 30 2.0 30 87 3 86 16 18 31 34 1.93
131380--131425 21 2.2 21 88 7 67 30 28 26 15 1.96
136421--136471 27 2.0 26 92 7 86 31 9 43 15 1.80
138079--138166 43 2.2 39 88 10 124 26 25 21 27 1.99
139485--139523 20 2.0 20 89 0 60 23 38 12 25 1.90
143132--143180 18 2.7 18 90 0 80 20 34 20 24 1.96
152192--152254 30 2.1 29 91 8 101 22 31 20 25 1.98
152234--152274 20 2.0 20 95 0 73 29 21 31 17 1.96
177526--177722 75 2.7 72 85 5 236 19 31 20 28 1.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
177490--177744 72 3.5 69 81 7 258 19 33 19 27 1.96
184423--184463 20 2.0 20 90 0 64 48 0 19 31 1.49
184432--184462 6 5.2 6 96 0 53 51 0 19 29 1.47
184429--184507 36 2.2 36 81 2 88 45 5 17 31 1.70
198140--198174 12 2.9 12 100 0 70 25 42 22 8 1.82
207462--207498 18 2.1 18 89 0 56 24 16 21 37 1.93
208764--208798 12 2.9 12 100 0 70 25 42 22 8 1.82
221630--221679 24 2.1 24 96 0 91 20 26 28 26 1.99
224473--224533 29 2.1 29 96 0 113 29 22 31 16 1.96
225478--225527 18 2.8 18 90 0 82 26 26 10 38 1.87
236547--236589 22 2.0 22 90 0 68 27 13 37 20 1.91
238903--238957 18 3.1 18 89 0 83 23 21 32 21 1.98
256441--256488 21 2.2 22 88 3 71 37 20 14 27 1.92
261508--261541 17 2.0 17 94 0 59 17 50 0 32 1.47
283043--283150 56 1.9 56 88 3 164 27 13 20 37 1.91
285988--286022 12 2.9 12 100 0 70 25 42 22 8 1.82
288470--288523 18 3.0 18 88 0 81 22 31 22 24 1.98
318599--318635 12 3.1 12 88 0 56 24 24 2 48 1.64
318750--318813 28 2.3 28 78 10 69 34 17 12 35 1.87
318764--318824 16 3.3 20 65 25 62 32 18 11 37 1.86
325814--325863 25 2.0 25 88 0 73 38 10 28 24 1.87
338699--338737 20 1.9 21 89 5 62 41 17 15 25 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
346203--346287 40 2.3 36 81 15 109 31 37 3 27 1.74
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Tables: 1
The End!