123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_030753
Parameters: 2 7 7 80 10 50 500
Length: 524797
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
26355--26397 18 2.4 18 81 18 54 18 20 25 34 1.96
32481--32509 14 2.0 15 93 6 51 13 27 31 27 1.94
40296--40333 20 1.9 20 84 10 51 15 39 21 23 1.92
53178--53277 30 3.3 30 94 0 164 7 33 35 25 1.83
53181--53289 30 3.6 30 90 2 94 7 35 32 24 1.83
67902--67964 33 1.9 33 87 12 94 52 1 0 46 1.10
67949--68010 33 2.0 32 87 9 92 45 1 0 53 1.10
68042--68089 21 2.3 22 78 7 55 52 4 0 43 1.20
95974--96019 22 2.1 22 100 0 92 13 36 19 30 1.90
127204--127240 6 6.2 6 100 0 74 16 16 0 67 1.23
146339--146393 27 2.0 27 100 0 110 43 21 10 23 1.84
173211--173257 12 3.9 12 85 0 58 36 6 36 21 1.79
180015--180114 30 3.3 30 94 0 164 25 35 33 7 1.83
200658--200690 15 2.1 16 88 5 50 3 9 30 57 1.45
202443--202491 8 5.9 8 81 9 62 59 0 4 36 1.17
202444--202491 18 2.8 17 81 6 53 60 0 4 35 1.16
202448--202491 12 3.7 12 81 0 52 59 0 4 36 1.18
203748--203783 18 2.0 18 88 0 54 8 25 25 41 1.83
203779--203831 27 2.0 26 88 3 79 9 20 22 47 1.79
261068--261146 31 2.5 31 78 8 106 7 26 26 39 1.83
262624--262679 28 2.0 28 82 6 69 30 30 32 7 1.84
268439--268481 22 2.0 22 85 0 59 30 18 27 23 1.98
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
316090--316132 18 2.4 18 81 18 54 18 20 25 34 1.96
345690--345782 31 3.0 31 83 1 114 32 17 26 23 1.96
354763--354795 4 8.2 4 87 12 50 75 0 24 0 0.80
370450--370493 24 1.9 23 90 9 72 29 9 20 40 1.83
371046--371151 32 3.4 32 71 15 112 1 43 19 34 1.62
371020--371164 62 2.3 62 100 0 290 1 41 21 35 1.62
371142--371381 39 6.2 39 99 0 471 5 40 17 36 1.72
371168--371386 48 4.5 48 72 11 97 5 41 17 36 1.73
376107--376281 90 1.9 89 95 4 316 18 31 33 16 1.93
411064--411105 16 2.6 16 80 0 57 11 28 14 45 1.80
416444--416481 12 3.1 12 92 3 58 42 23 18 15 1.89
447281--447453 90 1.9 90 100 0 346 19 30 34 16 1.94
456289--456327 20 2.0 19 85 5 51 17 30 35 15 1.91
464710--464874 31 5.2 32 69 21 91 9 33 17 39 1.83
464737--464872 31 4.4 31 71 21 115 9 35 16 38 1.82
464758--464872 32 3.7 31 69 17 96 8 37 16 37 1.80
465266--465344 27 2.9 27 70 20 65 13 22 29 34 1.93
490627--490681 21 2.6 22 74 8 60 34 27 16 21 1.95
491626--491655 14 2.1 14 93 0 51 46 13 26 13 1.80
497856--497942 41 2.2 39 87 8 122 11 28 29 29 1.92
504751--504805 27 2.0 27 85 0 74 10 23 38 27 1.88
513874--513916 20 2.2 20 100 0 86 30 13 4 51 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
513882--513920 10 3.9 10 80 12 53 30 12 7 48 1.69
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!