123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_037463
Parameters: 2 7 7 80 10 50 500
Length: 640906
Tables: 1
This is table 1 of 1 ( 47 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
564--599 18 2.0 18 100 0 72 33 27 11 27 1.91
6914--6962 22 2.2 23 85 10 66 20 46 12 20 1.82
29861--29896 18 2.0 18 94 0 63 30 13 16 38 1.88
31228--31284 19 3.0 19 89 0 96 42 7 28 22 1.80
43849--43896 13 3.6 14 74 25 50 58 8 27 6 1.51
76611--76660 24 2.1 24 96 0 91 32 34 22 12 1.90
76925--76974 24 2.1 24 96 0 91 12 22 34 32 1.90
126249--126313 32 2.0 32 96 0 121 16 27 27 27 1.97
164454--164509 28 2.0 28 96 0 103 14 37 17 30 1.90
185268--185292 5 5.0 5 100 0 50 60 0 20 20 1.37
229427--229476 24 2.1 24 100 0 100 34 16 12 38 1.85
229689--229719 10 3.1 10 95 0 53 48 3 0 48 1.17
234474--234501 14 2.0 14 100 0 56 21 21 7 50 1.72
234519--234564 22 2.1 22 100 0 92 36 17 0 45 1.49
235018--235054 18 2.1 18 100 0 74 32 32 10 24 1.90
237305--237341 17 2.2 17 100 0 74 56 0 10 32 1.34
255756--255787 15 2.1 15 100 0 64 62 0 6 31 1.20
260222--260252 16 1.9 16 93 0 53 29 12 9 48 1.73
260281--260305 12 2.1 12 100 0 50 60 0 24 16 1.36
262615--262656 21 2.0 21 85 0 57 21 4 2 71 1.16
270415--270460 23 2.0 23 100 0 92 47 17 8 26 1.76
274593--274667 21 3.2 24 70 16 68 10 24 8 57 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
283579--283624 23 2.0 23 100 0 92 26 8 17 47 1.76
300354--300392 21 1.9 20 89 5 60 30 10 25 33 1.89
309751--309799 25 2.0 24 92 4 80 42 4 8 44 1.53
309752--309806 25 2.2 25 87 6 76 45 3 9 41 1.53
311223--311264 18 2.3 18 100 0 84 19 23 11 45 1.83
314233--314275 21 2.0 22 95 4 79 46 11 18 23 1.82
320591--320621 15 2.1 15 93 0 53 87 0 3 9 0.66
326731--326764 16 2.1 16 94 0 59 26 2 5 64 1.30
369474--369503 15 2.0 15 100 0 60 26 0 26 46 1.53
409758--409826 24 2.9 24 72 8 77 33 8 33 24 1.86
416906--416954 16 3.1 16 88 5 73 8 22 18 51 1.72
416906--416953 15 3.1 15 90 3 69 8 22 18 50 1.74
427498--427535 18 2.1 18 95 0 67 63 5 7 23 1.42
441748--441790 18 2.6 16 82 10 52 20 20 32 25 1.97
491577--491614 18 2.1 19 90 5 60 52 21 23 2 1.59
495049--495091 8 5.2 8 88 5 50 46 0 9 44 1.35
503114--503154 18 2.2 20 86 8 59 56 9 0 34 1.32
506706--506736 14 2.2 14 94 0 53 58 3 0 38 1.15
530763--530810 25 2.0 24 87 4 69 18 12 27 41 1.86
545037--545072 18 2.0 18 94 0 63 30 33 2 33 1.72
556055--556091 16 2.3 16 95 0 65 56 35 0 8 1.29
565543--565622 40 2.0 40 100 0 160 20 22 12 45 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
606152--606188 18 2.1 18 100 0 74 29 21 5 43 1.75
618338--618388 18 2.8 18 94 5 86 45 5 0 49 1.26
618338--618395 18 3.1 18 90 5 62 44 6 1 46 1.40
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Tables: 1
The End!