123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_045136
Parameters: 2 7 7 80 10 50 500
Length: 682840
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
17549--17609 27 2.3 27 91 5 97 27 11 21 39 1.88
17561--17613 27 2.0 27 100 0 106 22 15 22 39 1.91
58285--58316 7 4.6 7 96 0 55 25 0 75 0 0.81
96281--96316 15 2.5 15 86 4 56 13 22 8 55 1.65
147620--147697 23 3.5 23 64 7 70 12 33 19 34 1.90
149048--149089 21 2.0 21 100 0 84 23 19 23 33 1.97
149049--149101 21 2.5 21 90 0 79 22 22 16 37 1.94
184637--184697 30 2.0 30 96 0 113 16 21 19 42 1.89
211575--211610 18 2.0 18 100 0 72 38 11 22 27 1.88
241823--241960 70 2.0 70 92 2 233 24 23 13 37 1.92
331717--331742 13 2.0 13 100 0 52 7 38 23 30 1.83
333248--333304 19 3.0 19 97 0 105 31 14 26 28 1.94
343581--343646 24 2.8 24 73 11 73 21 25 18 34 1.96
343699--343758 31 1.9 31 93 6 104 40 13 20 26 1.89
343698--343766 31 2.3 29 83 13 95 43 11 21 23 1.85
345328--345363 18 2.0 18 100 0 72 22 27 11 38 1.88
351122--351167 22 2.1 23 92 8 78 6 23 26 43 1.78
353146--353204 30 2.0 30 93 3 102 35 10 40 13 1.78
354143--354168 13 2.0 13 100 0 52 30 30 7 30 1.85
389452--389481 15 2.0 15 93 0 51 13 30 13 43 1.82
399896--399934 19 2.1 19 100 0 78 33 15 15 35 1.89
408522--408549 14 2.0 14 100 0 56 57 21 7 14 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
471668--471709 22 1.9 22 100 0 84 40 14 16 28 1.88
529001--529053 26 2.0 26 100 0 106 32 15 22 30 1.94
540596--540716 57 2.1 57 100 0 242 28 17 19 33 1.95
569813--569848 18 2.0 18 100 0 72 38 5 44 11 1.63
582837--582874 15 2.7 15 92 8 62 68 0 26 5 1.11
661272--661315 21 2.1 21 83 8 54 18 2 22 56 1.52
669526--669556 13 2.5 13 94 5 55 51 12 16 19 1.76
679342--679368 13 2.1 13 100 0 54 22 14 0 62 1.31
679907--679942 18 2.0 18 100 0 72 11 44 5 38 1.63
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!