123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_045228
Parameters: 2 7 7 80 10 50 500
Length: 434980
Tables: 1
This is table 1 of 1 ( 22 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
494--546 24 2.2 24 96 0 97 7 41 20 30 1.80
36002--36044 18 2.6 16 82 10 52 25 32 20 20 1.97
44543--44621 39 2.0 39 95 0 140 21 29 18 30 1.97
80922--80947 13 2.0 13 100 0 52 53 0 23 23 1.46
99505--99556 21 2.5 21 100 0 104 28 38 5 26 1.79
101270--101305 15 2.4 15 100 0 72 47 0 30 22 1.52
132596--132635 8 4.6 8 82 17 53 50 0 2 47 1.14
132588--132630 19 2.3 19 100 0 86 53 0 4 41 1.21
138296--138348 24 2.2 24 96 0 97 7 41 20 30 1.80
160242--160283 21 2.0 20 86 4 57 14 42 4 38 1.66
165405--165503 30 3.1 30 71 20 101 19 15 9 56 1.65
165423--165533 42 2.6 42 68 13 102 18 14 9 56 1.65
165435--165490 18 3.1 18 77 10 60 17 16 8 57 1.64
165453--165513 24 2.5 24 83 0 68 21 13 6 59 1.57
165515--165551 18 2.1 18 94 0 65 5 21 16 56 1.59
262144--262239 30 3.2 30 64 21 83 26 13 25 35 1.93
284272--284314 18 2.4 18 81 18 54 34 25 20 18 1.96
293793--293829 17 2.2 17 90 0 56 43 18 8 29 1.79
340444--340481 20 1.9 20 89 10 60 23 10 34 31 1.89
351392--351426 18 1.9 18 100 0 70 17 31 11 40 1.85
375236--375289 22 2.5 23 85 8 69 14 48 9 27 1.75
404262--404295 14 2.5 14 90 4 52 23 14 38 23 1.92
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!