123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_049134
Parameters: 2 7 7 80 10 50 500
Length: 967100
Tables: 1
This is table 1 of 1 ( 53 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
13103--13163 28 2.3 26 75 8 68 27 19 26 26 1.99
30290--30408 40 2.8 42 82 7 170 10 29 33 26 1.90
31102--31138 19 1.9 19 94 0 65 18 29 13 37 1.90
60984--61018 13 2.5 14 86 13 54 42 20 22 14 1.88
69121--69151 15 2.1 15 93 0 53 32 16 22 29 1.95
77026--77067 21 2.0 21 95 0 75 28 16 9 45 1.79
80410--80451 21 2.0 21 100 0 84 42 23 0 33 1.55
87011--87052 15 2.8 15 81 0 57 19 26 40 14 1.89
97503--97545 18 2.4 17 77 11 50 32 25 23 18 1.97
107121--107156 18 2.0 18 100 0 72 33 16 22 27 1.95
107553--107598 19 2.4 19 88 0 74 23 15 23 36 1.93
118655--118679 13 1.9 13 100 0 50 4 0 32 64 1.12
126244--126289 22 2.1 22 95 0 83 30 17 36 15 1.91
130682--130780 51 2.0 49 86 9 137 31 21 23 24 1.98
170554--170587 16 2.1 17 94 5 61 44 23 26 5 1.76
186030--186142 52 2.4 45 81 18 163 27 19 24 28 1.99
186042--186142 52 1.9 52 97 0 193 28 20 23 26 1.99
195953--195995 17 2.5 17 88 0 59 32 16 6 44 1.74
222837--222886 27 1.9 26 88 8 75 30 28 28 14 1.95
233661--233708 24 2.0 24 83 0 60 20 14 31 33 1.93
260741--260785 6 7.5 6 87 0 63 15 35 40 8 1.79
260741--260787 18 2.6 18 96 0 85 14 34 42 8 1.77
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
296964--297075 42 2.6 42 85 1 143 34 15 26 23 1.94
311740--311800 28 2.3 26 75 8 68 27 19 26 26 1.99
328971--329093 40 2.8 44 78 12 164 10 30 34 25 1.89
329786--329822 19 1.9 19 94 0 65 18 29 13 37 1.90
357991--358030 18 2.2 18 100 0 80 5 30 5 60 1.40
410870--410901 16 2.0 16 100 0 64 43 0 12 43 1.42
412061--412149 44 2.0 44 93 0 151 30 19 29 21 1.97
413081--413112 5 6.4 5 96 0 55 40 3 15 40 1.63
422060--422093 17 2.0 17 88 0 50 41 23 11 23 1.87
433890--433940 25 2.0 25 84 0 66 49 3 19 27 1.66
444818--444855 20 1.9 19 85 15 51 23 26 10 39 1.87
464795--464825 15 2.1 15 93 0 53 19 29 19 32 1.96
470229--470281 21 2.6 19 77 16 61 7 32 22 37 1.82
492497--492538 21 2.0 21 90 0 66 47 14 26 11 1.78
507696--507728 12 2.8 12 90 4 50 18 72 0 9 1.10
521664--521868 51 4.0 51 100 0 410 23 31 35 9 1.87
618312--618390 39 2.0 39 95 0 140 27 29 21 21 1.99
637861--637886 13 2.0 13 100 0 52 15 23 23 38 1.92
639219--639250 15 2.1 15 94 0 55 43 15 9 31 1.78
669853--669892 18 2.3 18 91 8 66 25 20 30 25 1.99
721560--721609 25 2.0 25 88 0 73 14 26 20 40 1.90
721829--721893 30 2.2 30 85 0 94 21 36 15 26 1.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
793732--793802 31 2.3 30 78 7 72 40 8 25 25 1.83
823490--823546 27 2.0 29 83 6 73 42 15 26 15 1.87
851043--851085 21 2.0 22 90 4 70 32 23 11 32 1.90
862961--863004 16 2.9 16 80 16 58 20 6 0 72 1.07
897078--897104 13 2.1 13 100 0 54 29 14 14 40 1.86
909549--909625 19 3.9 19 88 6 118 28 19 16 35 1.94
909547--909625 40 2.0 40 100 0 158 27 18 17 35 1.94
951568--951620 6 8.8 6 82 0 61 7 41 35 15 1.75
951578--951624 18 2.6 18 96 0 85 8 42 34 14 1.77
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Tables: 1
The End!