123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050067
Parameters: 2 7 7 80 10 50 500
Length: 460333
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3086--3128 20 2.2 20 82 0 50 41 13 18 25 1.88
3179--3221 20 2.2 20 82 0 50 41 13 18 25 1.88
3227--3390 70 2.3 70 90 0 247 40 20 16 22 1.91
72737--72819 21 3.7 23 75 18 77 13 22 9 54 1.68
72759--72826 21 3.2 21 82 0 82 11 22 7 58 1.57
75146--75202 18 3.2 18 92 0 96 31 5 26 36 1.79
101576--101611 18 2.0 18 94 0 63 5 25 5 63 1.38
116623--116656 17 2.0 17 100 0 68 35 11 5 47 1.65
123113--123159 17 2.8 17 93 0 76 53 4 0 42 1.20
135571--135626 27 2.1 27 96 0 103 3 48 14 33 1.61
195009--195040 16 2.0 16 100 0 64 25 31 0 43 1.55
211204--211246 20 2.2 20 82 0 50 41 13 18 25 1.88
211297--211339 20 2.2 20 82 0 50 41 13 18 25 1.88
211345--211508 70 2.3 70 90 0 247 40 20 16 22 1.91
214462--214495 16 2.2 15 89 5 50 47 0 0 52 1.00
274151--274182 16 2.0 16 100 0 64 25 6 25 43 1.77
301106--301152 18 2.7 18 83 3 60 42 21 8 27 1.81
303700--303753 19 2.9 20 86 13 71 53 3 0 42 1.18
303708--303753 19 2.5 19 92 3 76 56 4 0 39 1.19
305231--305260 15 2.0 15 93 0 51 56 6 23 13 1.60
314751--314778 14 2.0 14 100 0 56 50 14 7 28 1.69
320578--320643 32 2.1 32 97 0 123 40 24 9 25 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
374824--374849 13 2.0 13 100 0 52 53 0 7 38 1.30
375696--375743 16 3.0 16 79 11 62 43 4 6 45 1.48
404860--404915 27 2.1 27 96 0 103 33 14 48 3 1.61
404887--404979 35 2.7 35 71 15 93 31 16 40 11 1.84
418622--418818 59 3.4 59 82 9 285 8 43 18 29 1.79
418642--418794 29 5.2 29 80 10 195 7 45 18 28 1.75
422602--422643 18 2.3 18 80 19 52 19 19 26 35 1.95
439759--439786 14 2.0 14 100 0 56 35 28 0 35 1.58
448441--448519 39 2.0 39 97 0 149 21 27 18 31 1.97
449265--449296 16 2.0 16 100 0 64 50 0 0 50 1.00
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Tables: 1
The End!