123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_050681
Parameters: 2 7 7 80 10 50 500
Length: 135686
Tables: 1
This is table 1 of 1 ( 28 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
11304--11350 24 2.0 24 83 8 60 27 0 12 59 1.34
23465--23518 6 9.0 6 89 0 81 29 3 16 50 1.63
26696--26745 21 2.4 21 83 6 57 22 0 12 66 1.24
26719--26772 27 2.0 26 92 3 90 22 0 11 66 1.22
27902--27963 28 2.2 28 94 5 108 41 11 6 40 1.66
31453--31489 17 2.2 17 86 13 51 70 2 2 24 1.14
43675--43798 45 2.8 44 81 7 144 23 26 18 31 1.97
47486--47523 18 2.1 19 90 5 60 26 2 7 63 1.35
49450--49483 9 3.8 9 92 0 50 35 11 0 52 1.38
51101--51139 6 6.5 6 93 0 69 66 15 0 17 1.25
57264--57290 5 5.4 5 100 0 54 81 18 0 0 0.69
67370--67407 6 6.3 6 96 0 67 65 31 0 2 1.06
71484--71509 10 2.6 10 100 0 52 0 30 23 46 1.53
85814--85847 18 2.0 18 88 11 54 32 5 8 52 1.56
89556--89603 8 5.9 8 92 2 78 14 47 22 14 1.81
91898--91931 6 5.7 6 100 0 68 50 14 0 35 1.44
105991--106032 15 2.8 15 96 0 75 38 0 21 40 1.53
107776--107804 7 4.1 7 100 0 58 13 31 27 27 1.94
107940--107998 23 2.6 23 91 0 91 25 22 25 27 2.00
110537--110572 5 7.2 5 100 0 72 38 19 41 0 1.52
112657--112684 7 4.0 7 100 0 56 14 42 0 42 1.45
121238--121288 6 8.2 6 97 2 84 49 19 0 31 1.49
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
121329--121401 8 9.1 8 98 0 137 73 13 0 12 1.09
122013--122046 8 4.2 8 100 0 68 11 11 11 64 1.50
126858--126915 7 8.3 7 100 0 116 27 43 13 15 1.85
127817--127860 20 2.2 20 83 0 52 34 11 11 43 1.77
131325--131370 18 2.4 19 82 7 58 69 21 0 8 1.15
132182--132228 7 6.7 7 100 0 94 29 12 0 57 1.36
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Tables: 1
The End!