123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_053920
Parameters: 2 7 7 80 10 50 500
Length: 440720
Tables: 1
This is table 1 of 1 ( 56 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2076--2103 14 2.0 14 100 0 56 14 28 28 28 1.95
2415--2477 30 2.1 30 81 0 72 31 6 23 38 1.80
5433--5462 5 6.0 5 100 0 60 40 0 20 40 1.52
6711--6789 39 2.0 39 97 0 149 21 27 18 31 1.97
18545--18608 32 2.0 32 100 0 128 21 31 18 28 1.97
31137--31215 39 2.0 39 97 0 149 31 18 27 21 1.97
32464--32493 5 6.0 5 100 0 60 40 20 0 40 1.52
35449--35521 30 2.4 30 79 0 74 39 23 6 30 1.81
35709--35783 33 2.3 33 85 0 114 26 24 10 38 1.88
35823--35850 14 2.0 14 100 0 56 28 28 28 14 1.95
38882--38919 20 1.9 19 94 5 67 52 26 21 0 1.47
44958--45086 43 3.0 43 100 0 258 23 18 13 44 1.86
50140--50182 22 2.0 22 85 0 59 20 34 32 11 1.89
88240--88277 20 1.9 19 94 5 67 0 21 26 52 1.47
100485--100541 30 1.9 30 88 0 87 19 24 21 35 1.96
109165--109343 97 1.8 97 98 0 349 34 20 21 24 1.97
111031--111060 12 2.5 12 94 0 51 46 20 0 33 1.51
114814--114861 24 2.0 24 100 0 96 8 16 8 66 1.42
121188--121271 27 3.1 27 91 0 132 23 26 29 20 1.99
139734--139766 16 2.1 16 100 0 66 39 12 12 36 1.80
144654--144692 19 2.1 19 85 0 51 56 15 7 20 1.63
160133--160184 26 2.0 26 92 0 86 28 13 26 30 1.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
170797--170841 18 2.5 18 88 0 72 33 33 24 8 1.86
173769--173807 20 2.0 20 100 0 78 35 23 5 35 1.77
175822--175851 15 2.0 15 100 0 60 40 26 0 33 1.57
182877--182901 12 2.1 12 100 0 50 52 24 24 0 1.48
185579--185631 4 13.2 4 100 0 106 75 0 24 0 0.80
186761--186794 16 2.1 17 94 5 61 17 41 17 23 1.90
186951--187007 28 2.0 28 100 0 114 31 14 26 28 1.94
187337--187372 18 2.0 18 94 0 63 19 33 36 11 1.87
193106--193143 19 2.0 19 100 0 76 36 5 26 31 1.79
195606--195644 17 2.3 17 90 0 60 38 2 30 28 1.70
195957--196000 23 1.9 23 100 0 88 38 13 15 31 1.87
221194--221231 4 9.5 4 100 0 76 47 0 52 0 1.00
223888--223949 2 32.0 2 77 6 56 40 3 1 54 1.26
230057--230103 5 9.4 5 100 0 94 38 40 21 0 1.53
245214--245263 24 2.1 24 92 0 82 32 8 36 24 1.84
267549--267632 41 2.0 42 86 6 118 33 19 27 20 1.96
290447--290529 32 2.7 31 88 5 132 21 42 7 28 1.80
293372--293409 20 1.9 20 94 0 67 52 26 21 0 1.47
302642--302693 24 2.2 24 96 0 95 11 25 25 38 1.89
303966--304004 13 2.9 13 92 3 60 20 10 35 33 1.86
339671--339703 15 2.1 16 88 5 50 42 9 30 18 1.81
350487--350556 33 2.1 33 100 0 140 24 25 24 25 2.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
354975--355028 25 2.1 26 93 3 92 18 27 9 44 1.80
377313--377344 14 2.3 14 100 0 64 40 0 28 31 1.57
382424--382459 18 2.0 18 88 0 54 41 5 33 19 1.75
382427--382561 51 2.6 51 94 0 234 37 14 22 25 1.93
382529--382598 18 3.9 18 100 0 140 50 5 28 15 1.67
388693--388731 19 2.1 19 85 0 51 56 15 7 20 1.63
389394--389418 12 2.1 12 100 0 50 52 24 24 0 1.48
391935--391977 18 2.4 18 81 18 54 18 20 25 34 1.96
404807--404836 12 2.5 12 94 0 51 6 26 13 53 1.64
405035--405072 19 2.0 19 100 0 76 63 5 21 10 1.46
424504--424536 16 2.1 16 100 0 66 36 12 12 39 1.80
439735--439772 20 1.9 19 94 5 67 0 21 26 52 1.47
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Tables: 1
The End!