123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_056367
Parameters: 2 7 7 80 10 50 500
Length: 551622
Tables: 1
This is table 1 of 1 ( 48 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
36036--36089 25 2.2 25 100 0 108 44 20 14 20 1.86
36170--36215 23 2.0 23 91 0 74 36 19 15 28 1.92
36415--36480 33 2.0 33 100 0 132 27 18 15 39 1.90
36468--36512 23 2.0 23 100 0 90 24 8 31 35 1.86
56815--56876 31 2.0 31 96 0 115 40 6 29 24 1.80
83534--83634 34 3.0 34 97 0 184 45 18 15 19 1.85
83647--83689 21 2.0 21 100 0 86 30 4 37 27 1.77
83775--83823 24 2.0 24 100 0 98 46 12 28 12 1.77
90215--90261 26 2.0 24 84 16 62 31 17 25 25 1.97
98681--98726 23 2.0 23 95 0 83 43 4 15 36 1.66
131757--131792 18 2.0 18 100 0 72 44 16 27 11 1.82
203424--203469 23 2.0 23 100 0 92 30 30 17 21 1.96
206118--206157 20 2.0 20 95 0 71 30 20 12 37 1.89
206693--206738 23 2.0 23 100 0 92 21 17 30 30 1.96
242115--242148 17 2.0 17 100 0 68 29 11 17 41 1.85
247005--247067 21 3.0 21 100 0 126 14 23 4 57 1.56
247182--247237 13 4.3 13 74 14 53 7 48 0 44 1.30
247193--247295 27 3.8 27 82 5 145 7 40 1 49 1.43
249794--249829 18 2.0 18 100 0 72 16 22 5 55 1.62
259071--259098 14 2.0 14 100 0 56 28 35 0 35 1.58
259757--259794 19 2.0 19 85 10 51 44 21 31 2 1.66
313904--313936 11 3.0 11 95 0 57 51 0 30 18 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
322579--322611 14 2.4 14 94 0 57 27 15 3 54 1.55
322605--322648 21 2.1 21 100 0 88 34 4 9 52 1.54
325878--325914 18 2.1 18 94 0 65 16 21 24 37 1.93
327074--327117 21 2.1 21 100 0 88 22 20 0 56 1.42
333685--333728 21 2.1 21 95 0 79 25 11 13 50 1.75
349634--349683 25 2.0 25 100 0 100 40 12 20 28 1.87
391907--391938 17 1.9 17 93 6 57 31 12 25 31 1.92
398366--398423 29 2.0 29 96 0 107 22 17 29 31 1.96
402108--402147 20 2.0 20 100 0 80 45 0 15 40 1.46
411910--411955 23 2.0 23 95 0 83 36 15 4 43 1.66
420375--420421 26 2.0 24 84 16 62 25 25 17 31 1.97
426813--426861 24 2.0 24 100 0 98 12 28 12 46 1.77
426947--426989 21 2.0 21 100 0 86 27 37 4 30 1.77
427002--427102 34 3.0 34 97 0 184 19 15 18 45 1.85
433428--433471 21 2.1 21 100 0 88 52 9 4 34 1.54
433465--433497 14 2.4 14 94 0 57 54 3 15 27 1.55
444964--444993 14 2.1 14 100 0 60 40 23 16 20 1.91
480359--480404 23 2.0 23 100 0 92 30 30 17 21 1.96
484992--485035 23 1.9 23 100 0 88 29 31 15 22 1.95
487684--487723 20 2.0 20 95 0 71 30 20 12 37 1.89
487911--487964 21 2.6 21 78 0 72 38 22 25 12 1.90
507514--507577 18 3.6 17 87 8 92 32 26 31 9 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
507526--507580 18 3.1 18 94 0 101 32 27 32 7 1.84
528306--528331 13 2.0 13 100 0 52 46 15 15 23 1.83
530233--530260 11 2.5 11 100 0 56 7 21 0 71 1.09
535617--535651 6 6.0 6 96 3 63 48 0 17 34 1.47
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Tables: 1
The End!