123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_057142
Parameters: 2 7 7 80 10 50 500
Length: 521559
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
50526--50615 36 2.5 36 88 0 135 26 26 3 43 1.70
52693--52723 12 2.6 12 100 0 62 6 35 0 58 1.24
56797--56821 13 1.9 13 100 0 50 40 32 12 16 1.84
110739--110781 18 2.4 18 81 18 54 18 20 25 34 1.96
124597--124632 18 2.0 18 94 0 63 38 16 13 30 1.88
156053--156101 22 2.2 23 85 10 66 20 14 44 20 1.86
170420--170458 4 9.8 4 100 0 78 25 0 0 74 0.82
175655--175691 13 2.9 13 96 4 67 62 0 0 37 0.96
185015--185044 15 2.0 15 100 0 60 26 0 26 46 1.53
206832--206879 15 3.1 15 88 5 69 50 18 22 8 1.74
206831--206879 16 3.1 16 88 5 73 51 18 22 8 1.72
226499--226546 25 2.0 24 87 4 69 18 12 27 41 1.86
236037--236083 15 2.9 16 87 6 60 10 6 0 82 0.82
236579--236616 18 2.1 18 95 0 67 23 7 5 63 1.42
259964--260006 10 4.5 10 85 11 63 58 0 6 34 1.25
272160--272196 18 2.1 18 100 0 74 43 5 21 29 1.75
285996--286038 18 2.6 16 82 10 52 25 32 20 20 1.97
329767--329816 18 2.8 18 96 0 91 36 20 32 12 1.89
345144--345208 32 2.0 32 96 0 121 27 27 27 16 1.97
418377--418426 24 2.1 24 96 0 91 12 22 34 32 1.90
431204--431239 18 2.0 18 94 0 63 30 33 2 33 1.72
489866--489903 18 2.1 19 90 5 60 52 21 23 2 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
493332--493365 8 4.2 8 92 0 50 47 0 11 41 1.40
505005--505035 14 2.2 14 94 0 53 58 3 0 38 1.15
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Tables: 1
The End!