123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_058313
Parameters: 2 7 7 80 10 50 500
Length: 371275
Tables: 1
This is table 1 of 1 ( 19 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
33932--34067 71 1.9 70 89 4 211 36 13 27 22 1.91
40143--40189 23 2.0 23 100 0 94 25 25 17 31 1.97
78961--79010 25 2.0 25 100 0 100 32 24 32 12 1.91
82138--82189 21 2.5 21 96 0 95 23 25 13 38 1.91
126964--126996 16 2.1 16 100 0 66 63 0 6 30 1.18
132139--132220 43 1.9 43 100 0 164 17 42 20 19 1.89
132241--132295 21 2.6 21 94 0 92 40 18 25 16 1.91
150081--150143 25 2.5 25 97 0 117 30 17 31 20 1.96
191562--191611 25 2.0 25 100 0 100 32 24 32 12 1.91
194739--194790 21 2.5 21 96 0 95 23 25 13 38 1.91
238984--239009 12 2.2 12 100 0 52 53 0 46 0 1.00
245040--245065 11 2.4 11 100 0 52 46 11 30 11 1.76
249975--250056 43 1.9 43 100 0 164 17 42 20 19 1.89
250077--250131 21 2.6 21 94 0 92 40 18 25 16 1.91
257922--257963 12 3.5 12 100 0 84 23 19 14 42 1.87
278555--278635 38 2.1 38 100 0 162 41 29 4 23 1.75
280615--280640 12 2.2 12 100 0 52 0 46 0 53 1.00
286811--286851 20 2.0 20 100 0 82 39 26 19 14 1.90
367286--367332 23 2.0 23 100 0 94 31 17 25 25 1.97
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!