123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_058846
Parameters: 2 7 7 80 10 50 500
Length: 293897
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
30226--30255 12 2.6 12 94 5 53 53 0 13 33 1.40
67850--67926 12 6.5 12 87 3 102 9 55 0 35 1.31
67860--67926 35 1.9 35 93 0 116 10 52 0 37 1.36
89226--89261 7 5.1 7 100 0 72 41 0 30 27 1.56
99556--99592 9 4.1 9 100 0 74 32 21 0 45 1.52
113222--113249 14 2.0 14 100 0 56 14 7 0 78 0.95
113556--113621 32 2.1 32 97 0 123 25 9 24 40 1.84
118250--118290 20 2.0 20 100 0 82 4 29 14 51 1.63
138769--138845 12 6.5 12 87 3 102 9 55 0 35 1.31
138779--138845 35 1.9 35 93 0 116 10 52 0 37 1.36
144538--144565 14 2.0 14 100 0 56 14 7 0 78 0.95
144872--144937 32 2.1 32 97 0 123 25 9 24 40 1.84
149566--149606 20 2.0 20 100 0 82 4 29 14 51 1.63
169008--169042 16 2.2 16 100 0 70 37 17 28 17 1.92
171140--171172 17 1.9 17 100 0 66 51 6 12 30 1.63
188359--188418 10 6.0 10 100 0 120 60 20 10 10 1.57
192342--192373 15 2.1 15 100 0 64 34 12 18 34 1.89
193939--193974 16 2.2 16 90 0 54 55 30 8 5 1.52
205908--205939 15 2.1 15 94 0 55 9 31 12 46 1.73
239945--240081 71 1.9 71 91 4 224 35 13 27 22 1.92
268574--268605 15 2.1 15 94 0 55 9 31 12 46 1.73
275406--275454 24 2.0 24 96 0 89 38 24 22 14 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
283840--283906 25 2.7 25 90 0 116 40 16 26 16 1.89
286391--286434 15 2.9 15 100 0 88 47 13 18 20 1.82
288657--288746 27 3.3 27 93 0 144 32 21 18 27 1.97
293108--293143 7 5.1 7 100 0 72 41 0 30 27 1.56
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Tables: 1
The End!