123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_065060
Parameters: 2 7 7 80 10 50 500
Length: 683000
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
14185--14229 21 2.0 22 87 8 65 15 33 8 42 1.78
20173--20208 18 2.0 18 94 0 63 30 33 2 33 1.72
25143--25181 20 1.9 21 89 5 62 66 2 12 17 1.35
34247--34289 18 2.4 18 81 18 54 34 25 20 18 1.96
36378--36407 7 4.3 7 100 0 60 43 13 0 43 1.43
37403--37439 6 6.2 6 100 0 74 32 16 0 51 1.45
99147--99192 22 2.1 22 88 8 67 52 0 2 45 1.13
117870--117944 38 2.0 37 94 2 132 33 22 24 20 1.97
168801--168834 16 2.1 16 88 0 50 41 2 14 41 1.61
168798--168840 22 2.0 22 85 0 59 41 4 13 39 1.66
271286--271339 22 2.5 22 81 0 81 46 22 20 11 1.82
274269--274302 15 2.3 15 89 0 50 26 50 0 23 1.50
275076--275107 14 2.3 14 94 0 55 40 12 31 15 1.85
343362--343396 18 1.9 18 88 0 52 11 28 17 42 1.83
414510--414554 23 2.0 23 90 0 72 44 17 20 17 1.87
468569--468619 19 2.6 20 75 9 52 37 1 3 56 1.29
470838--470875 20 1.9 20 94 0 67 31 7 39 21 1.82
478020--478059 21 1.9 21 84 0 53 37 22 20 20 1.94
506156--506213 27 2.1 27 83 0 71 24 20 32 22 1.98
541906--541938 16 2.1 16 88 5 50 30 21 15 33 1.94
587682--587750 26 2.8 24 70 12 59 26 10 18 44 1.81
591126--591159 8 4.1 8 88 3 50 2 8 0 88 0.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
597224--597263 18 2.2 19 86 13 57 55 15 25 5 1.60
610661--610687 13 2.1 13 100 0 54 33 14 22 29 1.94
614479--614521 16 2.7 16 85 0 59 48 11 27 11 1.74
635104--635135 15 2.1 15 94 0 55 62 6 18 12 1.50
654405--654445 22 1.9 22 90 5 66 43 14 31 9 1.78
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Tables: 1
The End!