123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_065234
Parameters: 2 7 7 80 10 50 500
Length: 510187
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
24021--24125 30 3.5 30 100 0 210 12 38 12 37 1.81
39153--39198 22 2.0 23 87 4 67 17 23 15 43 1.87
48123--48172 25 2.0 25 88 0 73 14 26 20 40 1.90
48394--48458 30 2.2 30 85 0 94 21 36 15 26 1.93
71677--71718 21 2.0 21 100 0 84 33 0 23 42 1.55
75496--75525 14 2.1 14 93 0 51 46 13 20 20 1.83
78438--78475 20 1.9 20 89 10 60 31 34 10 23 1.89
105319--105365 22 2.2 21 85 11 60 4 23 4 68 1.26
110592--110629 19 2.0 19 94 0 67 34 23 26 15 1.95
114341--114367 14 1.9 14 100 0 54 25 22 14 37 1.93
115565--115622 18 3.2 17 80 9 62 17 15 20 46 1.84
132515--132576 30 2.1 30 100 0 124 24 32 9 33 1.88
132524--132589 30 2.2 30 86 5 89 28 33 12 25 1.92
162562--162616 17 3.0 19 79 15 62 34 3 23 38 1.73
181609--181687 39 2.0 39 95 0 140 21 26 18 32 1.97
196643--196804 25 6.5 25 100 0 324 27 16 40 15 1.88
205983--206026 22 2.0 22 86 8 63 47 4 18 29 1.68
207602--207629 14 2.0 14 100 0 56 28 14 14 42 1.84
275504--275588 22 3.5 22 71 20 80 28 24 29 17 1.97
313106--313175 36 1.9 36 91 5 115 12 32 35 18 1.89
317335--317382 21 2.3 21 88 0 69 10 18 18 52 1.74
322957--323053 51 1.9 51 89 4 151 17 25 21 35 1.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
338533--338567 17 2.1 17 94 0 61 25 20 22 31 1.98
379155--379217 21 3.0 21 100 0 126 28 28 14 28 1.95
384473--384515 18 2.6 16 82 10 52 25 32 20 20 1.97
387524--387595 31 2.3 31 100 0 144 11 41 11 36 1.76
429181--429220 20 2.0 20 100 0 80 20 40 15 25 1.90
435948--435990 18 2.4 18 81 18 54 18 20 25 34 1.96
437370--437411 21 2.0 21 100 0 84 52 23 19 4 1.65
464190--464229 21 2.0 20 90 5 62 42 25 10 22 1.84
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!