123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_065238
Parameters: 2 7 7 80 10 50 500
Length: 472138
Tables: 1
This is table 1 of 1 ( 47 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
13816--13856 21 2.0 21 90 0 64 31 19 34 14 1.92
15831--15871 20 2.0 20 100 0 82 29 14 19 36 1.92
38629--38653 12 2.1 12 100 0 50 36 8 32 24 1.84
40534--40575 18 2.3 18 80 19 52 23 14 26 35 1.93
51008--51052 21 2.1 21 95 0 81 55 2 17 24 1.53
57838--57928 17 5.4 17 98 0 164 32 0 61 5 1.19
70208--70261 18 3.0 18 100 0 108 38 11 22 27 1.88
77631--77684 19 2.8 19 94 2 90 57 9 5 27 1.52
79084--79161 26 3.0 26 98 0 147 38 33 5 23 1.77
102562--102597 19 1.9 18 94 5 63 25 5 11 58 1.54
138591--138632 19 2.1 21 86 8 61 47 0 0 52 1.00
151458--151500 18 2.6 16 82 10 52 20 20 32 25 1.97
168498--168535 20 1.9 20 100 0 76 5 26 0 68 1.11
168502--168543 18 2.2 19 83 8 50 9 26 0 64 1.24
168499--168541 20 2.1 20 86 4 59 9 25 0 65 1.22
178502--178532 11 2.8 11 100 0 62 54 0 19 25 1.44
182034--182064 12 2.6 12 94 0 53 54 6 6 32 1.51
182655--182694 20 2.0 20 90 0 62 45 5 0 50 1.23
183067--183122 20 2.8 21 78 10 64 51 0 0 48 1.00
183054--183127 18 4.0 19 76 13 66 51 1 0 47 1.09
193138--193166 14 2.1 14 100 0 58 44 13 13 27 1.82
205434--205459 13 2.0 13 100 0 52 38 0 15 46 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
212638--212689 20 2.8 19 85 8 72 40 5 3 50 1.45
214258--214288 15 2.1 15 93 0 53 25 12 9 51 1.70
215506--215541 17 2.1 17 100 0 72 27 0 16 55 1.42
250382--250407 12 2.2 12 100 0 52 50 7 0 42 1.31
263072--263115 22 2.0 22 95 0 79 20 15 18 45 1.85
284901--284926 13 2.0 13 100 0 52 61 0 15 23 1.33
296167--296249 21 4.0 21 98 0 157 16 39 4 38 1.70
296555--296592 20 1.9 20 100 0 76 68 0 26 5 1.11
307669--307699 16 1.9 16 100 0 62 38 0 16 45 1.47
311513--311541 14 2.1 14 100 0 58 37 13 34 13 1.85
326881--326910 14 2.1 14 100 0 60 40 16 23 20 1.91
327535--327569 16 2.2 17 90 10 56 11 11 5 71 1.30
348346--348381 18 1.9 19 88 5 56 30 27 27 13 1.94
357411--357489 39 2.0 39 92 0 131 31 18 27 21 1.97
362997--363031 15 2.3 15 90 0 52 34 11 22 31 1.90
371529--371572 22 2.0 22 95 0 79 38 13 15 31 1.87
378506--378535 15 2.0 15 93 0 51 20 43 10 26 1.83
386864--386924 30 2.0 30 100 0 122 50 6 3 39 1.45
386925--386971 2 25.0 2 85 12 64 53 2 0 44 1.12
386925--386970 17 2.8 17 93 3 76 54 2 0 43 1.12
386939--386968 15 2.0 15 100 0 60 53 0 0 46 1.00
391912--391947 18 2.0 18 100 0 72 38 5 11 44 1.63
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
408944--408980 18 2.1 18 100 0 74 32 5 27 35 1.79
443111--443164 19 2.8 19 94 2 90 57 9 5 27 1.52
449804--449830 13 2.1 13 100 0 54 22 37 11 29 1.89
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Tables: 1
The End!