123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_066488
Parameters: 2 7 7 80 10 50 500
Length: 457380
Tables: 1
This is table 1 of 1 ( 34 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8560--8604 23 2.0 23 91 4 74 15 40 8 35 1.79
8624--8663 20 2.0 20 100 0 80 25 25 5 45 1.73
64202--64249 19 2.5 19 89 0 78 45 12 16 25 1.82
99661--99686 13 2.0 13 100 0 52 46 7 0 46 1.31
113821--113857 16 2.5 15 87 12 58 16 18 24 40 1.90
113821--113857 15 2.4 16 91 8 60 16 18 24 40 1.90
115013--115076 35 1.9 32 84 12 85 20 25 21 32 1.97
116373--116441 27 2.6 27 95 0 120 37 15 15 30 1.90
120289--120328 21 1.9 21 94 0 71 20 17 5 57 1.58
120377--120440 33 1.9 33 96 0 119 17 35 23 23 1.95
120392--120503 54 2.1 54 96 0 206 16 36 20 26 1.93
120501--120554 27 2.0 27 100 0 108 37 18 33 11 1.86
121182--121256 29 2.6 29 100 0 150 37 10 18 33 1.86
121373--121430 28 2.1 28 93 6 100 43 13 24 18 1.87
121446--121478 17 1.9 17 93 0 57 51 3 9 36 1.49
124791--124858 32 2.1 33 97 2 129 47 11 22 19 1.81
182912--182939 14 2.0 14 100 0 56 28 21 7 42 1.79
184809--184855 16 3.0 16 84 9 53 34 19 8 38 1.82
194726--194773 23 2.1 23 92 0 78 31 29 0 39 1.57
204209--204273 32 2.2 31 86 10 91 35 13 18 32 1.90
269815--269862 25 1.9 25 95 0 87 52 0 14 33 1.42
269816--269857 13 3.3 13 73 6 50 47 0 16 35 1.47
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
285436--285475 19 2.1 19 90 0 62 22 20 17 40 1.92
286736--286768 16 2.1 16 94 0 57 24 12 27 36 1.91
303376--303412 16 2.5 15 87 12 58 16 18 24 40 1.90
303376--303412 15 2.4 16 91 8 60 16 18 24 40 1.90
304568--304631 35 1.9 32 84 12 85 20 25 21 32 1.97
305928--305996 27 2.6 27 95 0 120 37 15 15 30 1.90
319767--319814 19 2.5 19 89 0 78 45 12 16 25 1.82
355226--355251 13 2.0 13 100 0 52 46 7 0 46 1.31
394483--394551 36 1.9 36 100 0 138 36 18 24 20 1.95
428300--428332 16 2.1 16 94 0 57 36 27 12 24 1.91
445206--445253 25 1.9 25 95 0 87 33 14 0 52 1.42
453729--453756 11 2.5 11 100 0 56 71 0 21 7 1.09
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Tables: 1
The End!