123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_067574
Parameters: 2 7 7 80 10 50 500
Length: 573154
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
42224--42325 30 3.4 30 100 0 204 15 34 14 35 1.89
45521--45572 26 2.0 26 100 0 104 15 30 7 46 1.74
53677--53764 5 17.6 5 100 0 176 20 19 0 60 1.37
128995--129033 17 2.3 17 100 0 78 23 25 12 38 1.90
152090--152126 18 2.0 19 89 5 58 18 27 16 37 1.92
197340--197378 21 1.9 20 89 5 60 25 35 5 33 1.78
227613--227655 17 2.5 18 81 11 54 32 9 16 41 1.80
242546--242647 30 3.4 30 100 0 204 35 14 34 15 1.89
244029--244056 6 4.7 6 100 0 56 32 0 50 17 1.47
262104--262141 19 2.0 19 100 0 76 21 10 15 52 1.72
264297--264329 15 2.3 15 89 5 50 57 6 12 24 1.57
268329--268369 21 2.0 21 95 0 73 34 9 26 29 1.88
269084--269116 18 1.9 17 88 11 50 66 0 33 0 0.92
317009--317054 23 2.0 23 82 0 56 58 8 6 26 1.52
326748--326833 34 2.5 34 98 0 163 11 26 24 37 1.90
456295--456377 36 2.5 34 84 11 102 33 1 37 27 1.65
456413--456442 15 2.0 15 93 0 51 60 3 26 10 1.45
474233--474285 27 2.0 27 96 0 97 16 30 22 30 1.96
474671--474771 30 3.4 30 100 0 202 15 34 14 34 1.89
501152--501199 23 2.1 23 100 0 96 29 14 4 52 1.60
516262--516314 28 1.9 28 84 3 72 66 0 3 30 1.10
516704--516741 19 2.0 19 100 0 76 36 10 5 47 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
516713--516764 16 3.3 16 86 7 72 40 5 5 48 1.51
520520--520598 39 2.0 39 97 0 149 31 18 27 21 1.97
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Tables: 1
The End!