123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_068017
Parameters: 2 7 7 80 10 50 500
Length: 878988
Tables: 1
This is table 1 of 1 ( 68 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
12483--12524 13 3.2 13 96 0 75 38 21 14 26 1.91
34032--34077 22 2.1 22 87 0 65 43 15 4 36 1.66
34023--34062 17 2.4 17 83 4 55 42 15 5 37 1.68
44571--44599 7 4.1 7 100 0 58 13 41 0 44 1.44
75600--75639 10 4.0 10 86 0 53 2 25 15 57 1.50
115364--115406 16 2.6 17 92 7 79 41 13 4 39 1.66
136349--136374 13 2.0 13 100 0 52 7 15 23 53 1.67
164118--164181 32 2.0 32 100 0 128 40 15 15 28 1.88
178932--178998 34 2.0 34 100 0 134 17 20 17 43 1.88
181853--181918 34 2.0 33 96 3 123 45 6 24 24 1.75
182587--182655 19 3.6 19 90 0 111 28 18 13 39 1.88
196363--200712 40 104.7 43 73 20 1708 0 0 80 19 0.71
196364--201723 161 31.9 172 75 18 2256 0 0 83 16 0.67
196361--202579 224 28.0 234 77 16 2590 0 0 85 14 0.64
197419--202611 1 5193.0 1 77 0 4563 0 0 87 11 0.58
211580--211622 16 2.6 17 92 7 79 41 13 4 39 1.66
232225--232252 13 2.2 13 100 0 56 14 25 21 39 1.91
235871--235898 13 2.2 13 100 0 56 39 21 25 14 1.91
237002--237047 18 2.3 21 71 21 53 19 39 13 28 1.89
255848--255890 18 2.4 18 81 18 54 18 20 25 34 1.96
268924--269002 39 2.0 39 97 0 149 21 27 18 31 1.97
269349--269391 16 2.6 17 92 7 79 39 4 13 41 1.66
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
285765--285802 5 7.6 5 93 0 67 60 0 36 2 1.11
300039--300094 25 2.2 25 93 0 103 37 21 12 28 1.90
309590--309629 21 1.9 21 85 10 55 72 2 2 22 1.09
317660--317756 42 2.3 42 81 13 103 34 28 27 9 1.88
317940--317996 17 2.8 22 72 27 70 10 29 17 42 1.83
318131--318187 17 3.4 17 92 0 87 38 26 24 10 1.88
318210--318243 17 2.0 17 94 0 59 35 26 26 11 1.91
391252--391294 18 2.3 18 84 4 50 53 6 27 11 1.63
401591--401635 13 3.2 13 77 17 54 28 17 28 24 1.97
422265--422290 13 2.0 13 100 0 52 53 23 15 7 1.67
443231--443273 16 2.6 17 92 7 79 39 4 13 41 1.66
451909--451949 20 2.0 20 100 0 82 19 31 19 29 1.96
483048--483087 10 4.0 10 86 0 53 57 15 25 2 1.50
488648--488705 28 2.0 29 90 9 93 18 37 17 25 1.93
514087--514115 7 4.1 7 100 0 58 44 0 41 13 1.44
524609--524654 22 2.1 22 87 0 65 36 4 15 43 1.66
546162--546203 13 3.2 13 96 0 75 26 14 21 38 1.91
554290--554347 27 2.2 27 84 3 73 29 20 24 25 1.99
561450--561487 19 2.0 19 89 0 58 39 18 34 7 1.80
563918--563960 16 2.6 17 92 7 79 39 4 13 41 1.66
568998--569040 16 2.6 17 92 7 79 39 4 13 41 1.66
587269--587343 34 2.2 34 97 0 141 45 17 21 16 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
625909--625950 7 6.0 7 78 10 50 66 2 28 2 1.16
661146--661187 12 3.4 12 81 15 50 4 19 23 52 1.65
664075--664105 15 2.1 15 93 0 53 32 29 32 6 1.83
669192--669234 18 2.3 18 84 4 50 53 6 27 11 1.63
684512--684632 64 1.9 63 91 1 197 19 21 23 36 1.95
686518--686614 9 10.8 9 93 0 167 11 14 11 62 1.54
686514--686614 18 5.6 18 98 0 184 11 14 11 61 1.57
719506--719607 53 1.9 53 100 0 204 26 21 29 22 1.99
719667--719705 19 2.1 19 100 0 78 5 33 20 41 1.74
733992--734033 21 2.0 21 100 0 84 47 9 14 28 1.75
739977--740026 24 2.1 24 100 0 100 30 20 12 38 1.88
744364--744406 16 2.6 17 92 7 79 41 13 4 39 1.66
752816--752840 12 2.1 12 100 0 50 0 24 24 52 1.48
756744--756786 16 2.6 17 92 7 79 41 13 4 39 1.66
799912--800057 79 1.9 78 84 6 201 33 28 29 8 1.86
799888--800057 37 4.3 39 82 9 186 33 27 30 8 1.87
824740--824774 18 1.9 18 94 0 61 11 20 25 42 1.85
853204--853278 34 2.2 34 97 0 141 16 21 17 45 1.85
853791--853841 1 51.0 1 92 0 84 3 0 0 96 0.24
853857--853899 2 22.5 2 86 9 54 44 0 0 55 0.99
853867--853901 13 2.7 13 90 0 61 48 0 0 51 1.00
868635--868677 16 2.6 17 92 7 79 41 13 4 39 1.66
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
873715--873757 16 2.6 17 92 7 79 41 13 4 39 1.66
876188--876225 19 2.0 19 89 0 58 7 34 18 39 1.80
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Tables: 1
The End!