123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_070189
Parameters: 2 7 7 80 10 50 500
Length: 181688
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
567--614 21 2.2 22 96 3 89 43 20 14 20 1.87
10521--10565 21 2.1 21 88 8 65 37 26 20 15 1.92
20743--20791 23 2.1 23 100 0 98 22 12 30 34 1.91
23943--24026 23 3.7 23 98 0 159 33 30 13 22 1.92
28448--28481 16 2.1 17 94 5 61 5 26 23 44 1.76
36109--36177 21 3.3 21 73 18 72 39 27 17 15 1.90
36088--36176 42 2.1 42 87 8 128 40 25 17 15 1.90
47003--47077 21 3.6 21 76 16 75 40 24 18 17 1.91
46997--47078 42 2.0 42 90 4 130 40 24 18 17 1.91
61734--61774 21 2.0 20 90 5 55 14 21 24 39 1.91
73457--73497 21 2.1 19 81 9 55 14 17 26 41 1.88
75808--75848 21 2.0 21 90 5 57 14 21 24 39 1.91
79599--79675 21 3.7 21 96 0 136 40 18 18 23 1.91
93753--93795 18 2.4 18 81 18 54 18 20 25 34 1.96
112463--112523 21 3.0 20 73 21 63 40 24 19 14 1.89
120633--120687 21 2.6 21 94 5 94 23 14 25 36 1.93
122845--122978 45 3.0 45 98 0 259 22 32 26 17 1.96
144765--144882 21 5.5 21 77 17 100 20 14 26 38 1.91
148310--148344 17 2.0 18 88 5 54 37 17 25 20 1.94
156342--156420 39 2.0 39 95 0 140 30 18 29 21 1.97
162946--163030 23 3.7 23 98 0 161 22 12 30 34 1.92
175019--175074 21 2.7 21 88 8 87 35 21 21 21 1.96
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
177673--177720 21 2.3 19 80 16 51 41 29 16 12 1.85
179111--179167 21 2.7 21 84 12 73 19 17 26 36 1.94
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Tables: 1
The End!