123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_081910
Parameters: 2 7 7 80 10 50 500
Length: 876608
Tables: 1
This is table 1 of 1 ( 92 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
66--141 21 3.8 20 67 18 59 50 11 19 18 1.78
126--189 27 2.4 27 91 0 110 46 7 26 18 1.76
207--285 30 2.8 27 80 10 95 45 13 20 20 1.85
271--319 18 2.5 19 83 12 64 46 8 28 16 1.75
285--325 18 2.3 18 91 0 73 41 17 26 14 1.88
8492--8533 22 1.9 22 100 0 84 28 19 19 33 1.96
13583--13613 14 2.1 15 94 5 55 38 25 0 35 1.56
14401--14452 21 2.8 17 74 20 59 26 36 15 21 1.93
16135--16210 7 10.9 7 100 0 152 56 0 0 43 0.99
31439--31502 32 2.0 32 100 0 128 9 43 3 43 1.52
44629--44691 21 3.0 21 90 0 99 25 12 36 25 1.91
46472--46509 20 1.9 20 88 0 58 31 26 26 15 1.96
47622--47668 18 2.5 19 83 13 62 23 21 21 34 1.97
52624--52688 30 2.1 31 91 2 105 1 32 12 53 1.47
53389--53415 14 1.9 14 100 0 54 14 22 18 44 1.86
58511--58544 15 2.3 15 89 0 50 14 26 14 44 1.84
64476--64507 15 2.1 16 94 5 57 31 46 12 9 1.73
68217--68262 20 2.3 20 92 0 74 17 30 30 21 1.96
88882--88975 45 2.1 46 97 2 181 14 24 12 47 1.79
89465--89500 18 2.0 18 88 0 54 13 22 36 27 1.92
116791--116830 15 2.7 15 84 0 62 30 30 20 20 1.97
160273--160312 21 1.9 21 100 0 80 27 17 35 20 1.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
162198--162309 54 2.1 54 98 0 215 34 29 23 12 1.91
162971--163009 20 2.0 20 94 0 69 30 20 23 25 1.98
183125--183172 25 1.9 26 87 8 73 33 27 29 10 1.90
183779--183819 21 1.9 22 90 5 66 14 29 19 36 1.92
195255--195284 15 2.0 15 93 0 51 43 3 20 33 1.68
200340--200395 29 1.9 29 100 0 112 21 17 28 32 1.96
218115--218181 23 2.9 23 97 0 125 23 26 22 26 2.00
230992--231053 31 2.0 31 100 0 124 19 41 19 19 1.90
264054--264083 15 2.0 15 93 0 51 13 30 13 43 1.82
273682--273788 12 8.2 12 70 24 74 15 19 61 2 1.46
273680--273744 30 2.2 30 100 0 130 16 20 60 3 1.49
273700--273774 39 1.9 39 100 0 150 16 21 58 4 1.54
273680--273755 30 2.5 30 93 0 116 15 21 59 3 1.53
274008--274081 24 3.0 24 64 21 62 25 21 36 16 1.94
278067--278123 29 2.2 25 82 17 64 24 28 28 19 1.98
278306--278365 28 2.1 28 96 0 111 26 21 20 31 1.98
278862--278917 27 2.1 27 100 0 112 41 10 41 7 1.67
288936--288966 15 2.1 15 100 0 62 19 12 0 67 1.22
339580--339620 20 2.0 20 100 0 82 34 14 43 7 1.73
339723--339761 13 3.0 13 100 0 78 38 15 30 15 1.88
339783--339822 20 2.0 20 95 0 71 32 17 45 5 1.70
363041--363100 27 2.3 27 88 2 95 20 45 3 31 1.67
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
401597--401640 22 2.0 22 100 0 88 31 18 18 31 1.95
404442--404475 11 3.1 11 86 0 50 29 23 26 20 1.99
411009--411087 30 2.7 30 90 5 117 20 36 20 22 1.95
414987--415054 28 2.4 28 90 0 100 22 38 16 23 1.93
420224--420248 13 1.9 13 100 0 50 40 8 32 20 1.81
437766--437812 21 2.2 22 96 3 87 46 14 17 21 1.83
464697--464726 15 2.0 15 93 0 51 23 33 10 33 1.88
474717--474749 15 2.2 15 94 0 57 6 21 27 45 1.75
507817--507865 24 2.0 24 100 0 98 22 20 32 24 1.98
514796--514843 21 2.3 21 100 0 96 29 33 4 33 1.77
550540--550568 10 2.7 11 94 5 51 37 34 17 10 1.84
579462--580040 289 2.0 289 100 0 1158 26 23 27 22 1.99
598144--598185 20 2.1 20 100 0 84 23 16 30 28 1.96
602236--602481 136 1.8 136 100 0 492 34 17 26 20 1.95
636801--636835 17 2.1 17 94 0 61 8 14 40 37 1.76
654428--654522 24 4.0 24 95 2 167 34 14 12 37 1.84
687460--687507 25 1.9 25 100 0 96 37 16 27 18 1.92
705373--705411 19 2.1 19 100 0 78 30 10 20 38 1.86
716260--716354 24 4.0 24 95 2 167 34 14 12 37 1.84
722422--722451 15 2.0 15 93 0 51 33 20 3 43 1.68
735988--736027 21 1.9 22 90 10 66 40 17 25 17 1.91
754599--754627 15 1.9 15 100 0 58 20 10 13 55 1.68
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
761121--761165 22 2.0 22 100 0 90 26 13 42 17 1.86
768423--768468 22 2.1 22 95 0 83 15 36 17 30 1.91
790212--790268 23 2.6 23 86 8 75 7 33 22 36 1.81
790214--790277 20 3.1 20 76 17 60 7 35 18 37 1.80
812997--813053 29 2.2 25 82 17 64 24 28 28 19 1.98
813236--813295 28 2.1 28 96 0 111 26 21 20 31 1.98
813792--813847 27 2.1 27 100 0 112 41 10 41 7 1.67
816262--816318 29 2.2 25 82 17 64 24 28 28 19 1.98
816501--816560 28 2.1 28 96 0 111 26 21 20 31 1.98
817057--817112 27 2.1 27 100 0 112 41 10 41 7 1.67
819441--819472 16 2.0 16 100 0 64 12 37 18 31 1.88
821997--822044 24 2.0 24 95 0 87 27 14 12 45 1.81
822139--822189 22 2.3 23 86 3 68 39 3 47 9 1.55
822352--822402 24 2.1 24 100 0 102 35 15 11 37 1.84
823018--823073 28 2.0 28 100 0 112 46 14 21 17 1.84
823525--823594 35 2.0 35 100 0 140 17 20 25 37 1.94
830062--830096 18 2.0 18 88 5 54 5 34 8 51 1.56
837620--837652 16 2.1 16 94 0 57 30 9 48 12 1.71
838154--838210 25 2.2 25 87 6 78 38 15 38 7 1.75
841349--841407 31 1.9 31 92 0 100 35 10 30 23 1.88
864230--864347 50 2.2 52 92 7 195 25 22 26 26 2.00
874789--874858 35 2.0 35 100 0 140 37 25 20 17 1.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
875310--875365 28 2.0 28 100 0 112 17 21 14 46 1.84
875981--876031 24 2.1 24 100 0 102 37 11 15 35 1.84
876194--876244 22 2.3 23 86 3 68 9 47 3 39 1.55
876339--876386 24 2.0 24 95 0 87 45 12 14 27 1.81
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Tables: 1
The End!