123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_082294
Parameters: 2 7 7 80 10 50 500
Length: 286160
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1408--1445 18 2.1 18 95 0 67 34 18 18 28 1.95
7823--7858 18 2.0 18 94 0 63 36 19 22 22 1.95
39033--39154 30 4.0 30 95 2 217 22 3 27 46 1.67
39033--39154 61 2.0 60 95 1 217 22 3 27 46 1.67
43044--43072 14 2.1 14 100 0 58 55 6 6 31 1.53
51373--51417 18 2.5 18 100 0 90 33 26 11 28 1.91
61823--61901 39 2.0 39 95 0 140 22 27 17 31 1.97
63054--63081 14 2.0 14 100 0 56 64 7 28 0 1.20
67534--67560 12 2.2 12 100 0 54 51 0 25 22 1.48
90803--90866 21 3.4 21 68 28 70 35 12 26 25 1.91
91054--91084 6 5.2 6 92 0 53 54 16 29 0 1.42
93824--93881 30 1.9 30 92 0 98 36 22 13 27 1.92
109277--109365 33 2.7 33 96 0 169 20 29 8 41 1.82
113414--113468 25 2.2 25 87 3 76 20 29 3 47 1.67
117888--117922 17 2.1 17 89 5 54 22 8 2 65 1.34
132026--132112 34 2.6 34 100 0 174 26 25 32 16 1.96
148466--148501 12 3.3 11 88 11 56 25 0 13 61 1.33
166346--166379 17 2.0 17 100 0 68 52 5 17 23 1.66
177902--177926 12 2.1 12 100 0 50 44 8 8 40 1.63
177914--177965 26 2.0 26 100 0 104 53 3 15 26 1.59
178003--178088 41 2.1 41 100 0 172 38 12 13 34 1.84
196435--196579 70 2.1 71 98 1 283 31 26 9 31 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
229689--229775 28 3.1 28 100 0 174 18 17 36 27 1.93
252258--252291 18 1.9 17 88 5 50 14 20 29 35 1.93
256139--256225 34 2.6 34 100 0 174 16 32 25 26 1.96
259928--259970 18 2.4 18 81 18 54 18 20 25 34 1.96
263520--263551 16 1.9 17 93 6 57 43 9 28 18 1.81
268018--268046 14 2.1 14 100 0 58 55 6 6 31 1.53
272412--272454 21 2.0 21 82 8 52 25 16 46 11 1.80
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Tables: 1
The End!