123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_082539
Parameters: 2 7 7 80 10 50 500
Length: 298961
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3359--3394 18 2.0 18 94 0 63 44 16 8 30 1.77
3403--3467 23 2.8 23 92 0 103 56 10 10 21 1.63
3790--3835 23 2.0 23 100 0 92 34 0 56 8 1.30
4824--4851 14 2.0 14 100 0 56 50 7 14 28 1.69
9353--9385 17 1.9 17 93 0 57 27 27 18 27 1.98
31692--31720 14 2.1 14 100 0 58 51 6 27 13 1.66
60067--60102 5 7.2 5 100 0 72 80 19 0 0 0.71
81494--81560 22 3.1 22 64 23 61 28 16 23 31 1.96
86519--86548 15 2.0 15 100 0 60 13 33 6 46 1.69
87002--87030 15 1.9 15 100 0 58 27 37 13 20 1.91
106998--107036 19 2.1 19 100 0 78 20 20 20 38 1.94
110473--110513 20 2.0 21 85 4 57 24 36 19 19 1.95
118437--118471 15 2.3 15 90 9 54 20 8 11 60 1.57
119882--119927 5 9.2 5 100 0 92 41 19 19 19 1.91
124374--124428 27 2.0 27 100 0 110 40 23 3 32 1.72
135774--135817 23 2.0 23 86 4 63 9 22 15 52 1.71
143287--143319 17 1.9 17 93 0 57 27 27 18 27 1.98
145721--145755 5 7.0 5 100 0 70 40 0 0 60 0.97
149018--149102 23 3.7 23 82 0 98 12 34 14 38 1.84
159152--159177 5 5.2 5 100 0 52 19 0 38 42 1.51
161717--161765 24 2.0 24 96 0 89 8 18 42 30 1.79
162040--162084 5 9.0 5 100 0 90 40 40 0 20 1.52
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
162584--162655 31 2.2 33 83 16 87 37 33 12 16 1.86
166635--166665 5 6.2 5 100 0 62 61 0 19 19 1.35
170427--170496 36 1.9 36 100 0 140 42 18 11 27 1.84
173047--173086 5 8.0 5 100 0 80 60 0 20 20 1.37
180658--180701 17 2.8 15 80 12 52 31 20 22 25 1.98
182671--182724 28 1.9 28 81 7 65 44 14 24 16 1.85
194685--194736 27 1.9 27 84 0 68 7 30 17 44 1.77
201410--201435 12 2.2 12 100 0 52 38 26 0 34 1.57
218265--218306 21 2.0 21 100 0 84 19 4 57 19 1.58
236616--236642 13 2.1 13 100 0 54 40 7 37 14 1.74
252872--252916 5 9.0 5 100 0 90 20 20 0 60 1.37
257129--257280 67 2.3 67 82 4 225 26 15 23 34 1.95
260973--261003 5 6.2 5 92 0 53 38 3 16 41 1.64
282929--282959 15 2.1 15 100 0 62 41 12 19 25 1.87
288458--288503 13 3.5 13 82 11 67 26 26 26 21 2.00
297309--297343 18 1.9 18 100 0 70 34 14 28 22 1.93
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Tables: 1
The End!