123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_083147
Parameters: 2 7 7 80 10 50 500
Length: 235178
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ----- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
78982--79052 35 2.0 35 97 0 133 26 11 32 29 1.91
83934--83976 18 2.4 18 81 18 54 18 20 25 34 1.96
85593--85636 21 2.1 21 91 0 70 27 20 13 38 1.90
91764--91862 21 5.0 20 76 13 89 51 13 24 11 1.73
91778--91862 21 4.2 20 79 8 109 51 12 24 10 1.71
91934--91964 16 1.9 16 100 0 62 29 19 12 38 1.89
93490--93532 21 2.0 21 100 0 86 16 9 27 46 1.77
97543--97611 31 2.2 31 97 0 129 36 20 18 24 1.95
99303--99357 27 2.0 27 92 0 92 50 7 36 5 1.53
100269--100308 21 1.9 21 89 0 62 30 2 30 37 1.71
104119--104159 18 2.3 18 100 0 82 26 12 14 46 1.80
114895--114951 28 2.0 28 100 0 114 21 22 7 49 1.73
123471--123534 21 3.0 21 91 8 112 14 31 4 50 1.63
124245--124292 24 2.0 24 100 0 96 8 8 29 54 1.60
125556--125591 18 2.1 18 89 5 56 13 30 13 41 1.84
133064--133106 20 2.2 20 100 0 86 16 18 27 37 1.92
133072--133115 20 2.4 18 85 14 56 13 22 27 36 1.92
152149--152186 19 2.0 19 100 0 76 31 21 26 21 1.98
162134--162212 39 2.0 39 95 0 140 22 27 17 31 1.97
165837--165878 1 42.0 1 100 0 84 0 0 100 0 0.00
168464--168531 31 2.2 31 97 0 127 25 19 19 36 1.94
174008--174038 16 1.9 16 100 0 62 38 12 19 29 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
174112--174201 21 4.3 21 78 0 108 10 24 13 52 1.71
191898--191944 23 2.0 23 100 0 94 29 23 17 29 1.97
195054--195104 7 7.8 6 89 10 66 15 1 3 78 0.99
195050--195105 20 2.9 21 84 12 75 14 1 7 76 1.07
195050--195105 13 4.3 13 84 13 71 14 1 7 76 1.07
213747--213794 24 2.0 24 100 0 96 29 33 16 20 1.95
214268--214321 25 2.2 25 100 0 108 44 14 25 14 1.84
223921--223954 18 1.9 17 88 5 50 14 20 29 35 1.93
226679--226742 26 2.2 29 86 13 89 34 7 31 26 1.85
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ----- ---- ---------
Tables: 1
The End!