123.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: OK166971
    Parameters: 2 7 7 80 10 50 500
    Length:  435023

    Tables:   1   

    This is table  1  of  1  ( 21 repeats found )

    Click on indices to view alignment

Table Explanation

  --------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                           Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                    Size     Number   Size        Matches   Indels                                (0-2)

  14015--14078                      12       5.3      12          100       0         128     15   42   34   7    1.76

  74820--74883                      12       5.3      12          100       0         128     7    34   42   15   1.76

  83457--83536                      18       4.9      17          73        22        66      27   15   17   40   1.89

  133437--133461                    12       2.1      12          100       0         50      60   0    8    32   1.26

  167434--167483                    26       2.0      25          88        4         73      4    34   8    54   1.49

  173264--173304                    19       2.2      19          86        0         55      26   9    24   39   1.86

  184507--184567                    31       2.0      31          93        0         104     32   22   18   26   1.97

  186768--186933                    30       5.5      30          100       0         332     31   28   13   26   1.94

  227711--227756                    23       2.0      23          86        0         65      58   6    8    26   1.52

  241641--241701                    31       2.0      31          93        0         104     32   22   18   26   1.97

  241705--241805                    30       3.4      30          98        0         193     31   29   12   25   1.93

  292143--292214                    34       2.1      34          100       0         144     20   25   16   37   1.93

  325151--325202                    16       3.4      16          69        15        56      21   19   23   36   1.95

  325136--325204                    29       2.4      29          100       0         138     20   18   24   36   1.95

  329244--329285                    22       1.9      22          85        9         59      38   16   0    45   1.48

  337032--337058                    9        3.0      9           100       0         54      44   22   0    33   1.53

  343044--343116                    36       1.9      37          91        8         121     27   17   23   31   1.97

  347890--348051                    71       2.3      71          96        2         299     34   16   17   31   1.92

  371343--371443                    30       3.4      30          98        0         193     25   12   29   31   1.93

  371447--371507                    31       2.0      31          93        0         104     26   18   22   32   1.97

  425693--425722                    12       2.5      12          94        0         51      30   20   30   20   1.97
  --------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!