123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: OK539777
Parameters: 2 7 7 80 10 50 500
Length: 253373
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
558--594 18 2.1 18 100 0 74 35 27 10 27 1.90
34494--34524 15 2.1 15 100 0 62 87 0 6 6 0.68
41238--41381 72 2.0 72 100 0 288 18 29 22 30 1.97
41973--41998 13 2.0 13 100 0 52 15 23 46 15 1.83
45551--45582 16 2.0 16 100 0 64 31 31 18 18 1.95
73940--73968 15 1.9 15 100 0 58 17 13 0 68 1.20
74234--74261 14 2.0 14 100 0 56 0 14 7 78 0.95
80202--80258 8 6.4 8 75 18 51 3 14 3 78 1.01
80227--80261 9 4.0 9 85 7 54 0 14 0 85 0.59
87279--87307 5 6.0 5 92 8 51 37 0 0 62 0.96
87279--87307 9 3.0 10 90 10 51 37 0 0 62 0.96
87279--87306 14 2.0 14 100 0 56 35 0 0 64 0.94
93638--93691 21 2.5 21 96 3 99 68 3 14 12 1.34
95569--95599 14 2.2 14 94 0 53 67 12 3 16 1.35
99729--99772 12 3.5 12 85 11 61 15 0 0 84 0.63
99729--99771 22 2.0 22 90 4 70 16 0 0 83 0.64
109394--109439 23 2.0 23 100 0 92 47 17 8 26 1.76
113563--113624 21 2.7 23 80 14 83 12 22 9 54 1.67
113577--113618 21 2.0 21 100 0 84 9 19 9 61 1.53
118345--118378 17 2.0 17 100 0 68 70 11 17 0 1.16
122516--122561 23 2.0 23 100 0 92 26 8 17 47 1.76
138777--138815 21 1.9 20 94 5 69 33 10 25 30 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147162--147187 13 2.0 13 100 0 52 38 0 7 53 1.30
162502--162536 17 2.1 17 100 0 70 34 5 5 54 1.48
214220--214250 12 2.7 11 95 5 53 0 32 32 35 1.58
243401--243438 2 20.0 2 89 10 62 52 0 0 47 1.00
243404--243441 9 4.3 9 93 6 69 55 0 0 44 0.99
243401--243444 15 3.0 15 87 12 65 54 0 0 45 0.99
243401--243438 17 2.2 17 100 0 76 52 0 0 47 1.00
243401--243445 17 3.0 15 82 17 58 55 0 0 44 0.99
243630--243659 15 2.0 15 93 0 51 30 0 33 36 1.58
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!