123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: OM320814
Parameters: 2 7 7 80 10 50 500
Length: 368808
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
50341--50382 21 2.0 21 100 0 84 33 23 14 28 1.94
66386--66490 29 3.6 29 100 0 210 31 10 38 20 1.86
67217--67339 21 5.9 21 100 0 246 28 19 13 38 1.90
91054--91102 24 2.0 24 88 0 71 28 30 24 16 1.96
101718--101757 21 1.9 21 89 0 62 37 7 30 25 1.83
114239--114353 57 2.0 57 84 3 151 31 21 13 33 1.93
158975--159037 31 2.0 31 90 0 99 42 22 9 25 1.83
164184--164272 22 4.1 22 66 13 58 14 30 20 34 1.92
167042--167122 19 4.3 19 100 0 162 29 23 9 37 1.87
171319--171377 29 2.0 29 93 6 102 45 13 25 15 1.82
183299--183347 21 2.3 21 92 0 80 24 22 30 22 1.99
183600--183647 22 2.2 22 85 7 62 33 16 33 16 1.92
184879--184919 20 2.0 20 90 0 64 31 26 26 14 1.95
231457--231503 22 2.3 21 89 10 71 25 23 10 40 1.87
264299--264413 57 2.0 57 84 3 151 33 13 21 31 1.93
276900--276939 21 1.9 21 89 0 62 25 30 7 37 1.83
288049--288089 20 2.0 20 90 0 64 14 26 26 31 1.95
289321--289368 22 2.2 22 85 7 62 16 33 16 33 1.92
289545--289601 30 1.9 30 92 0 96 15 31 21 31 1.94
289621--289669 21 2.3 21 92 0 80 22 30 22 24 1.99
301594--301652 29 2.0 29 93 6 102 15 25 13 45 1.82
305849--305929 19 4.3 19 100 0 162 37 9 23 29 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
317841--317929 22 4.1 22 66 13 58 14 30 20 34 1.92
320704--320784 19 4.3 19 100 0 162 29 23 9 37 1.87
324981--325039 29 2.0 29 93 6 102 45 13 25 15 1.82
343397--343573 71 2.5 69 78 7 196 32 22 10 34 1.88
343715--343760 21 2.3 20 89 10 76 36 8 26 28 1.86
346698--346731 14 2.4 14 85 0 50 38 20 35 5 1.77
346700--346738 19 2.1 18 85 4 51 33 23 38 5 1.77
350822--350890 35 2.0 35 91 2 113 26 27 10 36 1.88
366979--367020 21 2.0 21 100 0 84 28 14 23 33 1.94
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!