123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: OM328072
Parameters: 2 7 7 80 10 50 500
Length: 410086
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3569--3639 2 36.5 2 94 5 128 52 0 0 47 1.00
6422--6467 6 7.7 6 100 0 92 15 52 15 17 1.76
42940--42979 21 1.9 21 84 0 53 12 40 25 22 1.89
51134--51169 18 2.0 18 89 10 56 30 16 25 27 1.97
64685--64710 11 2.4 11 100 0 52 19 38 15 26 1.91
76214--76251 20 1.9 20 88 0 58 39 10 21 28 1.86
87518--87576 29 2.0 29 90 6 93 44 13 27 15 1.84
102579--102651 24 3.0 24 91 0 119 28 30 24 16 1.96
113792--113825 14 2.4 14 85 0 50 38 20 35 5 1.77
113794--113832 19 2.1 18 85 4 51 33 23 38 5 1.77
117845--117942 30 3.3 30 100 0 196 19 32 15 32 1.93
121030--121112 27 3.1 27 98 0 157 57 0 34 7 1.26
124463--124577 57 2.0 57 84 3 151 33 13 21 31 1.93
128303--128327 13 1.9 13 100 0 50 40 16 8 36 1.77
137371--137398 7 4.0 7 100 0 56 42 0 0 57 0.99
172813--172876 21 3.0 21 67 15 51 34 21 31 12 1.91
182585--182647 31 2.0 31 90 0 99 25 9 22 42 1.83
188723--188748 13 2.0 13 100 0 52 38 15 0 46 1.46
199821--199918 51 1.9 51 100 0 196 25 28 15 30 1.96
208091--208205 57 2.0 57 84 3 151 33 13 21 31 1.93
211931--211955 13 1.9 13 100 0 50 40 16 8 36 1.77
220999--221026 7 4.0 7 100 0 56 42 0 0 57 0.99
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
237745--237773 13 2.1 14 93 6 51 44 13 0 41 1.44
240953--241054 52 2.0 52 98 0 195 30 13 28 27 1.94
250577--250665 22 4.1 22 66 13 58 14 30 20 34 1.92
250926--250965 21 1.9 21 89 0 62 37 7 30 25 1.83
277340--277398 29 2.0 29 90 6 93 44 13 27 15 1.84
286133--286160 14 2.0 14 100 0 56 71 0 7 21 1.09
308829--308963 30 4.5 30 100 0 270 18 31 9 40 1.83
326351--326431 19 4.3 19 100 0 162 29 23 9 37 1.87
341588--341636 21 2.3 21 92 0 80 24 22 30 22 1.99
341889--341936 22 2.2 22 85 7 62 33 16 33 16 1.92
367353--367378 11 2.4 11 100 0 52 26 15 38 19 1.91
380894--380929 18 2.0 18 89 10 56 27 25 16 30 1.97
389081--389120 21 1.9 21 84 0 53 22 25 40 12 1.89
392866--392979 56 2.0 56 85 9 153 18 29 17 34 1.94
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Tables: 1
The End!