123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: OM397952
Parameters: 2 7 7 80 10 50 500
Length: 554134
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
33208--33461 127 2.0 127 100 0 508 24 22 19 33 1.97
33671--33924 127 2.0 127 100 0 508 24 25 16 33 1.96
47297--47552 127 2.0 127 100 0 512 22 21 16 39 1.92
48214--48467 127 2.0 127 100 0 508 28 22 14 34 1.94
57238--57620 127 3.0 127 97 1 714 26 17 28 26 1.98
71722--71975 127 2.0 127 100 0 508 38 26 14 20 1.91
71935--72191 127 2.0 127 100 0 514 43 18 14 22 1.87
93537--93570 17 1.9 18 94 5 61 58 5 23 11 1.55
95304--95685 127 3.0 127 95 2 662 24 27 16 31 1.97
119843--120098 127 2.0 127 100 0 512 38 26 14 20 1.91
120058--120313 127 2.0 127 100 0 512 43 18 14 23 1.87
122459--122712 127 2.0 127 100 0 508 40 15 19 23 1.90
122693--122948 127 2.0 127 100 0 512 26 21 20 31 1.98
147823--147865 21 2.0 22 86 4 61 11 27 18 41 1.85
169378--169631 127 2.0 127 100 0 508 25 24 19 29 1.98
173779--174034 127 2.0 127 100 0 512 28 21 19 30 1.97
219392--219645 127 2.0 127 100 0 508 40 15 19 23 1.90
219626--219879 127 2.0 127 100 0 508 26 21 20 31 1.98
221479--221860 127 3.0 127 95 2 662 31 16 27 24 1.97
231213--231467 127 2.0 127 100 0 510 25 14 23 35 1.94
232083--232128 23 2.0 23 91 8 76 13 26 13 47 1.78
234005--234258 127 2.0 127 100 0 508 20 23 23 32 1.98
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
288870--289250 127 3.0 127 93 2 624 21 21 21 34 1.97
299612--299647 18 1.9 19 88 5 56 36 33 2 27 1.72
323390--323432 17 2.6 17 77 3 52 30 34 16 18 1.93
355245--355627 127 3.0 127 95 3 675 35 17 24 22 1.95
360009--360263 127 2.0 127 100 0 510 21 27 14 35 1.93
364065--364319 127 2.0 127 100 0 510 35 12 19 32 1.89
365049--365560 127 4.0 128 96 1 886 26 29 18 26 1.98
373096--373349 127 2.0 127 100 0 508 19 24 18 37 1.94
380372--380399 14 2.0 14 100 0 56 35 21 0 42 1.53
423908--424161 127 2.0 127 100 0 508 37 18 24 19 1.94
431706--432213 127 4.0 127 97 0 910 26 18 29 25 1.98
438477--438730 127 2.0 127 100 0 508 35 26 11 25 1.91
439324--439577 127 2.0 127 100 0 508 32 20 21 25 1.98
440334--440719 127 3.0 127 99 0 756 22 13 18 45 1.85
452917--453299 127 3.0 128 95 3 677 22 24 17 35 1.95
465287--465668 127 3.0 127 93 2 626 21 21 21 34 1.97
489221--489603 127 3.0 127 91 5 573 22 24 30 22 1.99
490535--490788 127 2.0 127 100 0 508 32 23 23 20 1.98
492665--492710 23 2.0 23 91 8 76 47 13 26 13 1.78
493326--493579 127 2.0 127 100 0 508 35 23 14 25 1.94
497598--497854 127 2.0 127 100 0 514 23 24 22 29 1.99
505532--505787 127 2.0 127 100 0 512 35 17 17 28 1.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
546075--546328 127 2.0 127 100 0 508 23 24 22 29 1.99
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Tables: 1
The End!