123.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: OY282532
Parameters: 2 7 7 80 10 50 500
Length: 335023
Tables: 1
This is table 1 of 1 ( 64 repeats found )
Click on indices to view alignment
Table Explanation
--------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
16906--16930 13 1.9 13 100 0 50 40 12 32 16 1.84
16921--16951 16 1.9 16 100 0 62 41 6 32 19 1.77
20531--20571 12 3.2 12 86 6 55 46 26 12 14 1.80
29378--29414 19 1.9 19 94 0 65 37 24 29 8 1.84
30178--30210 16 2.0 17 94 5 59 60 0 12 27 1.32
39974--40013 21 1.9 21 89 0 62 37 22 22 17 1.94
40959--40994 16 2.2 16 90 0 54 58 5 8 27 1.50
61714--61755 13 3.3 13 83 3 50 59 2 16 21 1.48
66243--66269 13 2.1 13 100 0 54 70 7 7 14 1.32
70455--70498 22 1.9 24 86 9 65 47 15 13 22 1.81
75211--75252 16 2.6 16 96 0 75 42 7 30 19 1.78
76272--76303 13 2.5 13 94 0 55 15 31 9 43 1.78
83855--83887 9 3.7 9 95 0 57 42 24 12 21 1.86
86341--86592 68 3.7 68 91 2 382 44 13 13 28 1.82
87265--87439 94 1.9 94 100 0 350 25 19 30 24 1.98
88364--88404 21 1.9 22 90 5 66 19 19 2 58 1.50
88393--88419 3 9.0 3 100 0 54 0 33 0 66 0.92
105480--105667 22 8.5 22 89 1 295 16 42 15 26 1.88
105460--105535 23 3.3 23 66 3 73 25 30 21 23 1.99
111807--111908 43 2.4 43 94 0 177 16 19 29 34 1.94
119582--119647 31 2.3 28 87 10 89 24 9 21 45 1.80
120168--120212 15 3.0 15 100 0 90 53 6 6 33 1.53
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
120412--120437 12 2.2 12 100 0 52 34 23 19 23 1.96
133354--133378 12 2.1 12 100 0 50 16 8 24 52 1.70
134861--134892 13 2.5 13 94 0 55 15 31 9 43 1.78
140582--140606 12 2.1 12 100 0 50 24 8 24 44 1.80
143683--143801 36 3.3 36 100 0 238 33 14 29 22 1.93
145230--145289 16 3.8 16 95 0 102 18 35 8 38 1.81
148690--148716 14 1.9 14 100 0 54 29 14 14 40 1.86
174268--174299 13 2.5 13 100 0 64 15 9 21 53 1.70
175195--175231 18 2.1 18 90 5 58 27 21 13 37 1.91
198234--198266 16 2.1 16 94 0 57 33 9 24 33 1.87
199161--199223 21 3.2 21 63 28 57 22 25 20 31 1.98
199127--199248 37 3.4 37 91 2 185 22 24 18 33 1.97
199228--199274 18 2.5 19 82 6 60 21 27 19 31 1.97
200006--200049 13 3.1 14 83 9 54 70 15 6 6 1.31
200002--200085 15 5.8 15 77 14 79 67 14 8 9 1.40
199979--200068 27 3.3 27 77 8 94 66 14 8 10 1.44
200445--200500 18 3.3 18 73 14 55 66 12 10 10 1.46
200466--200504 15 2.6 15 83 0 51 64 17 10 7 1.48
208888--208933 22 2.1 22 91 0 74 41 10 34 13 1.79
212673--212716 13 3.3 13 83 3 52 54 11 11 22 1.68
213269--213294 13 2.0 13 100 0 52 46 7 7 38 1.61
213787--213817 12 2.6 12 94 0 53 38 12 12 35 1.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
215809--215842 14 2.7 12 83 16 50 58 5 8 26 1.51
215811--215838 14 2.0 14 100 0 56 57 7 7 28 1.52
217038--217133 46 2.1 46 94 0 165 37 18 31 12 1.88
232262--232321 16 3.8 16 95 0 102 38 8 35 18 1.81
236056--236091 19 1.9 19 88 5 56 13 27 27 30 1.94
242204--242273 36 1.9 36 94 0 122 27 17 21 34 1.95
249234--249279 23 2.0 23 95 0 83 45 8 21 23 1.80
249258--249289 15 2.2 15 94 5 57 50 9 25 15 1.74
254969--255004 9 3.9 9 85 7 54 13 11 16 58 1.63
254967--255010 19 2.3 19 96 0 79 13 9 15 61 1.56
263029--263088 16 3.8 16 95 0 102 18 35 8 38 1.81
266666--266697 13 2.5 13 94 0 55 43 9 31 15 1.78
268676--268707 13 2.5 13 94 0 55 15 31 9 43 1.78
273277--273336 16 3.8 16 95 0 102 38 8 35 18 1.81
275089--275120 13 2.5 13 94 0 55 15 31 9 43 1.78
281504--281535 13 2.5 13 94 0 55 43 9 31 15 1.78
288180--288231 24 2.2 24 92 0 86 28 26 17 26 1.97
289091--289242 47 3.2 47 100 0 304 21 24 18 36 1.95
289353--289435 36 2.3 36 100 0 166 22 28 14 33 1.94
294530--294554 12 2.1 12 100 0 50 52 24 8 16 1.70
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Tables: 1
The End!