KF242477.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: KF242477.1 Argyreia nervosa chloroplast, partial genome
Parameters: 2 7 7 80 10 50 500
Length: 159847
Tables: 1
This is table 1 of 1 ( 62 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5959--6007 19 2.6 19 100 0 98 40 14 0 44 1.45
6931--6959 14 2.1 14 100 0 58 37 13 6 41 1.72
8185--8247 13 5.2 13 80 16 57 34 4 3 57 1.36
8181--8257 38 2.0 38 85 5 102 36 3 5 54 1.41
8180--8252 19 3.8 19 76 16 62 35 4 4 56 1.38
9176--9207 16 2.0 16 93 0 55 50 0 3 46 1.17
10007--10045 16 2.4 17 86 8 62 46 0 17 35 1.49
32605--32649 19 2.4 19 96 0 81 35 15 11 37 1.83
33165--33198 17 2.0 17 94 0 59 29 14 5 50 1.67
43858--43919 31 2.0 31 96 0 115 59 9 8 22 1.55
48016--48048 15 2.3 15 89 5 50 24 9 0 66 1.20
48351--48382 16 2.0 16 93 0 55 25 12 3 59 1.48
48958--49003 16 2.9 16 100 0 92 17 32 4 45 1.68
49370--49402 16 2.0 17 88 5 50 42 6 12 39 1.67
50848--50889 21 2.0 21 95 0 75 28 30 4 35 1.78
58937--58962 12 2.2 12 100 0 52 15 11 7 65 1.46
59063--59111 24 2.0 24 100 0 98 34 20 24 20 1.96
59593--59659 24 2.8 24 97 0 125 46 4 20 28 1.70
59881--59911 3 10.3 3 92 0 53 29 0 70 0 0.87
61042--61074 16 2.1 16 100 0 66 30 18 6 45 1.73
61160--61202 18 2.4 18 96 0 77 41 0 9 48 1.35
65070--65102 15 2.2 15 100 0 66 48 6 12 33 1.65
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
65407--65452 22 2.0 23 88 12 69 69 0 17 13 1.19
65411--65452 14 3.1 14 93 3 68 69 0 16 14 1.20
68747--68776 13 2.4 13 94 5 53 63 6 6 23 1.43
70113--70153 21 2.0 21 95 0 73 29 26 9 34 1.88
71305--71349 18 2.6 17 85 3 54 68 2 13 15 1.30
74310--74337 13 2.2 13 100 0 56 60 7 7 25 1.48
90409--90454 21 2.2 21 84 0 56 10 26 15 47 1.78
90418--90462 21 2.1 21 95 0 81 15 20 22 42 1.89
92677--92758 18 4.2 18 77 17 83 34 8 23 34 1.85
92695--92762 24 3.1 24 72 24 85 32 10 23 33 1.88
92670--92762 42 2.2 42 100 0 186 33 9 23 33 1.87
100563--100596 15 2.3 15 89 0 50 29 5 17 47 1.71
108545--108589 23 2.0 22 91 4 72 31 17 33 17 1.94
109896--109966 35 2.0 35 94 0 124 43 9 9 36 1.71
110632--110679 12 4.0 12 100 0 96 41 16 8 33 1.78
110863--110923 12 5.6 11 75 21 58 63 4 21 9 1.43
110871--110926 21 2.7 21 97 0 103 64 5 21 8 1.42
111996--112066 21 3.2 21 63 18 54 45 12 21 21 1.84
111969--112213 45 5.4 45 94 0 364 44 15 20 19 1.87
112086--112156 21 3.2 21 64 24 56 46 12 19 21 1.83
112093--112169 27 3.2 27 62 30 73 42 15 19 22 1.88
112062--112180 24 5.2 24 62 25 69 45 15 21 17 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
114871--115067 24 8.2 24 94 0 295 54 10 19 15 1.70
123645--123670 12 2.2 12 100 0 52 19 15 23 42 1.89
133309--133505 24 8.2 24 94 0 295 15 19 10 54 1.70
136169--136287 24 5.2 24 62 25 69 17 21 15 45 1.85
136180--136301 27 5.2 27 60 31 73 21 21 15 41 1.89
136145--136425 45 6.2 45 96 0 445 19 20 15 44 1.87
136193--136263 21 3.2 21 64 24 56 21 19 12 46 1.83
136283--136398 21 5.2 21 61 19 56 20 21 12 44 1.85
137450--137505 21 2.7 21 97 0 103 8 21 5 64 1.42
137450--137513 12 5.8 12 74 22 61 9 20 6 64 1.45
138329--138399 35 2.0 35 94 0 124 36 9 9 43 1.71
139707--139751 23 2.0 22 91 4 72 17 33 17 31 1.94
147728--147769 15 3.0 15 86 13 63 52 7 0 40 1.29
147728--147770 12 3.4 12 80 20 52 53 6 0 39 1.28
155059--155142 18 4.3 18 73 16 78 33 23 9 33 1.87
155055--155147 42 2.2 42 100 0 186 33 23 9 33 1.87
155077--155146 24 3.2 24 69 23 80 34 21 8 35 1.84
157346--157390 21 2.1 21 95 0 81 42 22 20 15 1.89
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Tables: 1
The End!