KX832626.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: KX832626.1 Platycladus orientalis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 127113
Tables: 1
This is table 1 of 1 ( 75 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
11711--11759 20 2.5 20 93 0 80 46 4 8 40 1.52
13795--13839 19 2.2 22 77 18 53 46 13 6 33 1.69
25058--25105 3 16.0 3 100 0 96 0 33 0 66 0.92
33008--33062 27 2.0 27 100 0 110 43 3 18 34 1.67
41281--41318 20 1.9 20 88 0 58 28 7 18 44 1.78
42784--42826 20 2.2 20 100 0 86 25 9 20 44 1.81
42921--42964 22 2.0 22 100 0 88 31 22 27 18 1.97
44069--44113 21 2.1 22 83 4 56 46 6 2 44 1.42
44068--44197 63 2.0 67 94 5 232 36 7 4 50 1.52
57229--57324 32 3.0 32 98 0 183 28 8 28 35 1.86
62793--62826 17 2.0 17 94 0 59 38 14 5 41 1.70
62809--62872 23 2.8 23 95 2 112 40 15 4 39 1.68
62866--62928 3 21.3 3 73 15 51 39 1 0 58 1.07
62861--63033 24 6.9 24 74 21 128 41 3 0 54 1.22
62843--63011 81 2.1 79 92 6 281 41 5 1 52 1.32
62950--63031 22 3.7 22 90 8 114 41 1 0 57 1.06
62893--63064 57 3.1 56 77 11 151 44 2 0 52 1.18
62821--63031 103 2.1 101 86 7 293 41 5 1 51 1.34
62866--63037 81 2.1 82 87 9 255 41 2 0 55 1.19
62843--63068 79 2.8 81 85 9 263 43 3 0 51 1.26
62944--63037 3 32.3 3 72 18 65 40 1 0 58 1.05
62988--63064 30 2.5 31 85 10 104 46 0 0 53 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62890--63085 26 7.3 28 71 16 112 44 3 1 51 1.24
63068--63103 17 2.1 17 94 0 63 41 13 5 38 1.68
68487--68520 18 2.0 18 88 11 54 8 17 20 52 1.71
70366--70403 19 2.0 19 100 0 76 57 0 5 36 1.21
70719--70791 21 3.0 26 71 19 84 32 15 12 39 1.84
70697--70791 47 2.0 47 87 2 136 35 11 12 40 1.80
70687--70780 21 4.2 21 72 15 80 39 8 14 37 1.77
70854--70962 36 3.0 36 100 0 218 36 13 5 44 1.68
72877--72977 21 5.0 21 75 11 102 47 9 7 34 1.66
72815--73016 60 3.4 60 94 0 341 46 8 9 34 1.68
73064--73211 21 6.8 21 76 11 145 28 15 12 43 1.84
73056--73211 66 2.4 66 95 0 276 28 16 12 42 1.83
73193--73280 33 2.7 33 75 10 90 44 7 14 32 1.75
73736--73783 24 2.0 24 95 0 87 35 14 25 25 1.94
74608--74685 27 2.9 27 88 0 111 33 16 24 25 1.96
74750--74792 21 2.0 21 100 0 86 39 9 4 46 1.57
75036--75146 24 4.6 24 89 0 150 38 18 9 34 1.82
78318--78352 17 2.1 17 100 0 70 42 5 11 40 1.65
78803--78835 15 2.2 15 100 0 66 27 0 33 39 1.57
78852--78955 50 2.1 50 100 0 208 35 14 5 44 1.69
82846--82907 24 2.6 24 89 0 106 48 19 16 16 1.81
83902--83952 24 2.1 24 88 0 75 41 19 17 21 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
84836--84877 21 2.0 21 100 0 84 42 38 14 4 1.66
86068--86144 33 2.3 33 95 0 145 29 14 20 35 1.92
86018--86221 111 1.8 111 93 0 354 28 13 19 38 1.89
86181--86495 111 2.7 113 71 26 284 32 13 18 35 1.90
86336--86422 33 2.6 33 96 0 156 31 12 20 35 1.90
86102--86389 78 3.7 78 88 3 395 30 12 19 37 1.89
86412--86483 25 3.1 25 65 19 64 33 12 19 34 1.89
86402--86495 45 2.1 45 90 4 145 32 14 17 35 1.90
88348--88533 60 3.2 60 86 5 238 27 24 12 35 1.92
88348--88533 30 6.3 30 84 9 195 27 24 12 35 1.92
89122--89222 18 5.4 18 92 4 157 0 11 29 58 1.34
89217--89353 18 7.3 18 88 9 184 3 21 10 64 1.39
89199--89353 39 4.1 37 83 10 120 3 20 12 63 1.42
89217--89335 39 3.1 39 87 10 181 4 22 10 63 1.43
89217--89353 57 2.4 57 95 0 238 3 21 10 64 1.39
89217--89353 39 3.7 38 87 8 169 3 21 10 64 1.39
90547--90588 21 2.0 21 100 0 84 38 14 0 47 1.44
91621--91697 18 4.3 18 89 0 118 33 16 5 44 1.70
94865--94948 18 4.8 18 77 11 93 57 3 28 10 1.49
94858--94928 37 2.0 34 89 8 106 53 4 29 12 1.57
94858--94913 18 3.0 19 78 5 78 51 5 28 14 1.64
94902--94930 15 1.9 15 100 0 58 58 0 34 6 1.25
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
95228--95259 16 2.0 16 100 0 64 75 6 0 18 1.01
97802--97834 16 2.1 16 100 0 66 30 24 6 39 1.79
106259--106314 24 2.3 24 87 6 78 23 14 12 50 1.77
110803--110866 32 2.0 32 96 0 119 18 17 9 54 1.69
110872--110906 18 1.9 18 88 0 52 8 17 5 68 1.35
113139--113270 42 3.1 42 98 0 255 26 9 15 47 1.77
114350--114435 9 9.6 9 84 0 109 29 23 4 43 1.74
114350--114430 18 4.5 18 98 0 144 28 24 4 41 1.75
115908--116056 30 5.0 30 100 0 298 16 26 9 46 1.77
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Tables: 1
The End!