LC744566.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: LC744566.1 Swertia japonica Tsugeno chloroplast DNA, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153208
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4948--4986 11 3.4 12 86 10 55 61 0 7 30 1.24
5302--5327 12 2.2 12 100 0 52 76 7 0 15 0.99
6230--6290 25 2.5 24 82 10 72 32 13 8 45 1.72
6244--6298 25 2.2 26 93 3 94 27 14 9 49 1.73
6505--6564 10 6.3 10 79 13 65 36 1 11 50 1.49
6508--6566 6 11.0 6 70 29 53 35 1 13 49 1.52
6503--6579 26 3.0 26 87 11 97 36 2 11 49 1.53
6534--6565 11 3.0 11 95 4 57 37 0 15 46 1.46
6555--6589 14 2.4 15 90 9 63 40 0 11 48 1.39
8251--8275 11 2.3 11 100 0 50 44 0 8 48 1.32
15080--15107 14 2.0 14 100 0 56 35 14 7 42 1.73
31290--31325 18 2.0 18 100 0 72 33 16 5 44 1.71
31550--31590 13 3.1 14 89 10 68 29 7 12 51 1.66
31604--31640 19 1.9 19 88 0 56 48 5 13 32 1.65
32504--32529 13 2.0 13 100 0 52 61 0 15 23 1.33
45189--45218 14 2.1 14 100 0 60 53 6 6 33 1.53
45680--45709 15 2.0 15 93 0 51 20 0 3 76 0.92
47029--47071 21 2.0 21 100 0 86 37 9 4 48 1.56
47063--47100 19 2.0 19 100 0 76 31 5 5 57 1.43
47227--47260 16 2.1 16 100 0 68 23 5 11 58 1.55
48336--48365 15 2.0 15 93 0 51 46 0 16 36 1.47
51181--51234 10 5.2 10 82 8 72 35 12 0 51 1.40
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
51176--51234 21 2.8 21 100 0 118 33 13 0 52 1.41
51176--51260 42 2.0 42 82 8 102 37 10 1 50 1.45
51612--51639 14 2.0 14 100 0 56 21 7 14 57 1.61
58213--58275 33 1.9 33 90 6 101 39 17 14 28 1.89
66905--66948 22 2.0 22 100 0 88 4 31 0 63 1.14
67627--67667 21 2.0 21 85 0 55 34 24 7 34 1.83
69838--69863 13 2.0 13 100 0 52 76 0 7 15 0.99
82040--82069 15 2.0 15 100 0 60 20 13 6 60 1.55
88276--88330 24 2.5 22 85 8 67 14 23 12 49 1.78
88276--88365 21 4.1 22 78 8 85 12 24 10 53 1.68
90720--90758 18 2.2 18 95 0 69 33 7 25 33 1.84
107998--108022 12 2.1 12 100 0 50 32 8 8 52 1.60
111327--111371 22 2.0 22 100 0 90 33 17 13 35 1.89
122667--122694 14 2.0 14 100 0 56 35 7 21 35 1.81
128506--128530 12 2.1 12 100 0 50 52 8 8 32 1.60
145770--145808 18 2.2 18 95 0 69 33 25 7 33 1.84
148181--148234 21 2.6 21 82 11 74 59 11 20 9 1.59
148170--148252 21 3.8 22 76 9 71 51 10 24 13 1.72
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Tables: 1
The End!