MN062357.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MN062357.1 Passiflora incarnata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151337
Tables: 1
This is table 1 of 1 ( 98 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3693--3720 13 2.2 13 100 0 56 39 21 7 32 1.80
4303--4329 13 2.1 13 100 0 54 59 0 14 25 1.36
5914--5966 19 2.8 19 91 0 79 32 3 0 64 1.12
5915--5966 10 5.4 9 81 9 59 32 1 0 65 1.04
7658--7700 21 2.0 21 100 0 86 62 0 13 23 1.31
9197--9225 9 3.2 9 100 0 58 55 0 24 20 1.44
13227--13272 23 2.0 23 100 0 92 26 21 4 47 1.69
27266--27318 3 17.7 3 88 0 79 39 32 28 0 1.57
27267--27336 9 7.8 9 86 0 95 42 30 24 2 1.69
28428--28462 10 3.5 10 92 7 54 22 0 5 71 1.07
31112--31149 16 2.4 17 86 13 62 60 5 18 15 1.53
31120--31151 16 2.0 16 100 0 64 56 6 18 18 1.62
31309--31338 15 2.0 15 100 0 60 13 33 0 53 1.40
32399--32438 20 2.0 20 100 0 80 40 5 10 45 1.60
39961--39998 18 2.1 18 90 0 58 10 42 26 21 1.85
40029--40061 15 2.2 15 100 0 66 6 51 0 42 1.26
40059--40196 45 3.1 45 91 0 231 9 40 18 31 1.82
40039--40191 15 10.2 15 86 1 191 8 43 15 32 1.77
40189--40229 15 2.7 15 92 0 73 7 39 7 46 1.60
40077--40214 45 3.1 45 85 8 167 9 41 16 32 1.81
40174--40277 39 2.7 38 75 20 110 7 40 9 42 1.66
40264--40291 12 2.3 12 100 0 56 7 50 10 32 1.64
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
40077--40286 75 2.8 73 80 13 209 9 40 14 35 1.77
40433--40534 51 2.0 51 98 0 195 20 35 15 28 1.93
40687--40835 48 3.1 48 85 0 208 16 21 19 42 1.88
40970--41176 114 1.8 114 97 0 396 20 23 19 36 1.95
41215--41377 48 3.4 48 85 0 227 14 19 20 45 1.85
41562--41627 30 2.2 30 100 0 132 13 16 3 66 1.37
41742--41778 19 1.9 19 94 0 65 40 24 8 27 1.83
42112--42141 13 2.2 14 94 5 53 46 10 16 26 1.78
44950--44980 15 2.1 15 100 0 62 41 12 6 38 1.69
47913--47972 19 3.2 19 100 0 120 43 10 10 36 1.72
50216--50253 16 2.4 16 95 0 67 28 5 10 55 1.56
51360--51384 13 1.9 13 100 0 50 32 8 12 48 1.69
52102--52149 21 2.2 22 88 3 71 31 12 2 54 1.49
52200--52229 14 2.1 15 93 6 53 20 13 0 66 1.24
54019--54058 20 2.0 20 95 0 71 47 10 5 37 1.59
56277--56374 10 11.2 9 69 20 66 46 0 0 53 1.00
56330--56373 18 2.6 18 89 7 65 47 0 0 52 1.00
56334--56370 13 3.0 13 84 11 51 48 0 0 51 1.00
56447--56507 20 3.0 20 95 0 104 26 11 9 52 1.68
61766--61809 22 2.0 22 100 0 88 22 22 13 40 1.89
62838--62870 16 2.1 16 100 0 66 24 24 6 45 1.75
66388--66416 14 2.1 14 100 0 58 37 20 6 34 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67275--67316 21 2.0 21 100 0 84 33 4 28 33 1.78
67673--67698 13 2.0 13 100 0 52 23 7 38 30 1.83
68193--68238 19 2.4 19 88 0 65 50 6 10 32 1.63
68487--68526 19 2.1 19 100 0 80 62 0 5 32 1.17
68672--68744 10 7.6 10 74 20 75 50 0 0 49 1.00
68692--68733 12 3.8 12 76 23 56 50 0 0 50 1.00
68672--68750 18 4.2 18 85 12 106 50 0 0 49 1.00
71072--71108 18 2.1 18 100 0 74 37 8 5 48 1.56
71161--71187 13 2.1 13 100 0 54 18 0 22 59 1.38
72940--72988 22 2.2 22 100 0 98 24 20 12 42 1.86
73059--73158 20 4.9 21 72 13 84 33 14 2 51 1.53
73026--73155 61 2.1 61 97 0 242 32 16 3 48 1.61
73113--73338 95 2.5 93 84 9 288 28 17 5 48 1.69
73230--73261 13 2.5 13 95 5 57 31 12 0 56 1.37
73210--73263 20 2.7 20 85 5 65 33 12 0 53 1.39
73305--73336 13 2.5 13 95 5 57 31 12 0 56 1.37
73408--73446 19 2.1 19 100 0 78 41 5 10 43 1.61
73857--73895 15 2.7 15 88 4 53 46 2 0 51 1.14
76378--76402 13 1.9 13 100 0 50 16 16 0 68 1.22
78410--78441 16 1.9 17 93 6 57 12 3 3 81 0.93
82989--83038 25 2.0 25 96 0 91 38 12 4 46 1.60
83685--83722 19 2.0 19 100 0 76 36 0 5 57 1.21
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
83689--83724 11 3.5 11 78 21 51 38 0 5 55 1.23
84679--84703 12 2.1 12 100 0 50 44 8 16 32 1.76
85071--85146 27 3.0 24 76 10 80 25 22 6 46 1.76
85612--85650 19 2.1 19 100 0 78 15 33 0 51 1.44
86823--86876 18 3.0 18 94 0 99 27 29 11 31 1.91
88616--88651 18 2.0 18 100 0 72 27 11 27 33 1.91
98129--98162 16 2.1 16 94 0 59 52 0 14 32 1.42
107083--107149 19 3.4 19 67 15 55 38 8 10 41 1.71
107068--107149 40 2.0 41 95 2 148 41 8 9 40 1.69
108912--108959 24 2.0 24 95 0 87 31 4 14 50 1.62
109260--109295 18 2.0 18 100 0 72 61 5 11 22 1.50
110210--110255 18 2.6 18 93 6 76 41 23 19 15 1.89
110352--110402 18 2.8 18 90 0 84 56 23 15 3 1.56
111682--111740 11 6.1 11 71 28 62 55 37 0 6 1.26
111682--111735 18 3.0 18 100 0 108 55 38 0 5 1.23
111776--111826 25 2.0 25 100 0 102 54 0 7 37 1.29
111914--111948 15 2.4 15 95 4 63 42 0 0 57 0.99
114916--114965 25 2.0 25 100 0 100 40 24 16 20 1.91
116950--116983 17 2.0 17 94 0 59 67 2 5 23 1.26
119265--119294 15 2.0 15 100 0 60 53 13 6 26 1.64
120620--120645 13 2.0 13 100 0 52 53 0 0 46 1.00
120880--120921 8 5.4 8 80 5 50 59 0 11 28 1.33
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
120958--120993 15 2.4 15 90 0 54 30 11 0 58 1.33
126579--126629 18 2.8 18 90 0 84 3 15 23 56 1.56
126726--126771 18 2.6 18 93 6 76 15 19 23 41 1.89
127686--127721 18 2.0 18 100 0 72 22 11 5 61 1.50
128022--128069 24 2.0 24 95 0 87 50 14 4 31 1.62
129832--129913 40 2.0 41 95 2 148 40 9 8 41 1.69
129832--129898 19 3.4 19 67 15 55 41 10 8 38 1.71
138819--138852 16 2.1 16 94 0 59 32 14 0 52 1.42
148330--148365 18 2.0 18 100 0 72 33 27 11 27 1.91
150106--150161 18 3.1 18 94 0 103 30 10 30 28 1.91
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!