MN814867.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: MN814867.1 Rotheca serrata chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  150371

    Tables:   1   

    This is table  1  of  1  ( 19 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  16096--16150                       24       2.5      22          85        8         67      14   23   12   49   1.78

  16118--16185                       21       3.2      21          77        8         75      11   22   10   55   1.65

  18527--18625                       12       9.2      12          71        24        96      26   14   31   28   1.95

  18551--18613                       18       3.8      18          76        23        84      26   12   30   30   1.93

  18539--18627                       30       3.0      30          100       0         178     26   13   30   29   1.94

  26210--26244                       18       1.9      18          88        0         52      28   8    8    54   1.60

  34134--34194                       31       2.0      31          93        0         104     40   21   9    27   1.85

  56602--56662                       31       2.0      31          93        0         104     27   9    21   40   1.85

  64552--64586                       18       1.9      18          88        0         52      54   8    8    28   1.60

  72183--72245                       18       3.8      18          76        23        84      30   30   12   26   1.93

  72171--72269                       12       9.2      12          71        24        96      28   31   14   26   1.95

  72169--72257                       30       3.0      30          100       0         178     29   30   13   26   1.94

  74629--74682                       21       2.6      21          82        11        74      59   11   20   9    1.59

  74611--74700                       21       4.1      22          75        8         67      53   11   23   12   1.70

  83447--83492                       24       1.9      24          86        8         67      30   15   26   28   1.96

  94699--94739                       21       2.0      21          90        0         64      36   9    21   31   1.86

  117563--117593                     16       1.9      16          93        0         53      29   19   16   35   1.93

  146476--146512                     18       2.1      18          100       0         74      27   27   10   35   1.90

  146595--146634                     19       2.1      19          90        0         62      37   7    12   42   1.71
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!