MN901632.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MN901632.1 Syringa reticulata subsp. pekinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155819
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7087--7114 14 2.0 14 100 0 56 42 14 7 35 1.73
37896--37923 13 2.2 13 100 0 56 60 0 7 32 1.24
43464--43558 46 2.1 46 100 0 190 21 16 10 51 1.74
43994--44053 30 2.0 30 90 0 93 63 13 5 18 1.47
44035--44077 21 2.0 21 95 0 77 48 11 11 27 1.74
44024--44411 184 2.1 183 94 0 677 47 8 10 33 1.68
44692--44744 20 2.6 20 93 3 88 62 1 3 32 1.24
49193--49231 19 2.0 20 90 5 62 23 15 7 53 1.67
57056--57081 13 2.0 13 100 0 52 53 7 15 23 1.67
59157--59206 25 2.0 25 100 0 100 32 12 24 32 1.91
60264--60288 12 2.1 12 100 0 50 40 8 8 44 1.63
60460--60504 15 3.0 15 90 0 63 31 8 35 24 1.86
60764--60949 81 2.3 81 96 2 342 24 8 46 20 1.79
60834--60877 18 2.4 18 100 0 88 20 9 56 13 1.64
60926--60951 3 8.7 3 100 0 52 34 0 65 0 0.93
62606--62650 21 2.1 21 100 0 90 31 22 15 31 1.95
71018--71100 21 4.0 21 96 0 148 28 27 10 32 1.91
78095--78175 28 3.1 28 61 29 70 39 12 18 29 1.87
78086--78189 49 2.1 49 100 0 208 40 9 15 34 1.80
91198--91265 21 3.2 21 77 8 75 14 20 7 57 1.61
93601--93695 18 5.3 18 91 2 120 25 11 31 31 1.91
109445--109505 31 2.0 31 93 0 104 40 21 9 27 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
110992--111131 72 1.9 72 100 0 280 41 7 9 42 1.64
111033--111229 98 2.0 98 100 0 394 44 7 10 38 1.66
111105--111157 26 2.0 26 100 0 106 50 7 11 30 1.65
114482--114520 20 2.0 20 85 10 53 56 23 0 20 1.42
129371--129413 14 3.1 14 80 3 52 0 20 9 69 1.15
129879--130008 63 2.1 63 100 0 260 27 25 10 36 1.89
131702--131754 26 2.0 26 100 0 106 30 11 7 50 1.65
131630--131826 98 2.0 98 100 0 394 38 10 7 44 1.66
131728--131867 72 1.9 72 100 0 280 42 9 7 41 1.64
133354--133414 31 2.0 31 93 0 104 27 9 21 40 1.85
141339--141376 18 2.1 18 100 0 76 50 15 0 34 1.45
141362--141407 23 2.0 23 86 0 65 60 6 6 26 1.46
149180--149274 18 5.3 18 91 2 120 31 31 11 25 1.91
151618--151681 21 3.0 20 76 17 67 56 7 20 15 1.64
151610--151677 21 3.2 21 77 8 66 57 7 20 14 1.61
153701--153958 126 2.0 129 95 3 468 40 11 15 32 1.82
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Tables: 1
The End!